Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11426 ATGGAAAGCTCTAATGATGTAGTCATTGGTAATTCAGATGATGATATAGAACCTTTTCGTGTTGTTAGTTCTGATGATAGTGCAAGTGATGAGGAAAATAATGCTATTGGTTCTGATAGTGATAGTGAAAGTAGTAGTGATATTGACCCAGATATTCCTAATAATAGTGAACAGAAAGTCTCTGGTGGAAATGAGACCTCTTTAATTGAAGTTGGAGGTGAAAAATTTAAAAGAATAGATGAATTGACTTATGAAGACATTATGGGGCTAGATTTTGGTAGTGAAAAAGAAGCGGGTGATTTTTATGAGACTTATGCAAAGAGCATGGGTTTTGCAATAAGGAAAGATGATGTAAAGAAGGATGTTAGGGGCCAGGTTCGAATGCGGCAATTTGTTTGCAGTAGGGAGGGTCAAAGGAACAAAAAACATTTAATGCGGGTTGATAGAAAAAGGGAACATAGACGATTGACTCGGACTTCATGTCGTGCTAAACTCCGTGTTCACTATAATCTGAAGACAAATAGGTGGAAAGTGGTTTCATTTGTCCACACTCATAACCATGAACTATGCCCATCAGGATTTAGGCACCTGATTAGTGCATATCGCTGTATTCGGGATTCAGATAAAGCACAAATAGATAGCTTGCATGCACATGGGGTAAGAACCTGCCACATAATGGGTTATTTGGTAGCTCAGAGAGGGGGATATGGTAATCTGAGTTTTATGAGAAAGGATGTGTATAATTATCTTGATAGCAAAAATCGCCTTCGGATTAAAGGTGGGGATGCACGTGCTGCGTTAAGTTATCTTCAAGGCAAATCTAATAGTGATCCTGTGCTATTTTGCAAGTACACGATTGATGAGATGGATAGATTGAAGACCCTATTTTGGGCTGATGGTGCATGTGTGTCTGACTATTTATGCTTCGGTGATGTTCTAGCCTTTGACACCACATATAAGAAGAATAAATACCATCATCCTTTGGTTATTTTCTCTGGGTGTAATCACCATTCCCAAATTGTTATTTTTGGCTTTGCATTGGTTCCAGATGAGACAATTGAGACATACAAGTGGGTCCTTGAAGCTTTTTTGCAGGCAATGTTCTACAAACAACCAAAATCTGTTGTGACAGATGGAGATGGAGCTATGAGAGAGGCCATTAAGCAAGTCTTTCCCAATGCATCACACAGATTATGTGCTTGGCACTTGCAGAAAAATGCATGTGAAAATGTAAAAAGTGCTTCTTTTTTACAAGACTTCCAGACTGCTGTGTACTCGAATTTCACCCCAGACAAATTTGAAGTGTATTGGAAGAAGATGGTTTCGAAACATGGATTGGAAAGGAACAATTGGGTTACTAAAACCTATGAGAACAAATCATTATGGGCCACAGCATATTTCCGTGATAAGTTCTTTGGTAGAATAAGAACTACTTCTCAATGTGAGGCTATAAATTCATTTATAAAGGCATATGTACGGAAGAGGAGCAGTTTTGTTGAATTAATGCATAATATTGACCAAACCTTGAGAGAGTATAGAAATAATGAACTGATTGCAGATTACAAGTCATTATTCTCAGAACCTGTGTTGACTACATCATTATATAAGATTGAGAAAGATGCGGCCAAAACCTACACTTAA 1641 0.379 MESSNDVVIGNSDDDIEPFRVVSSDDSASDEENNAIGSDSDSESSSDIDPDIPNNSEQKVSGGNETSLIEVGGEKFKRIDELTYEDIMGLDFGSEKEAGDFYETYAKSMGFAIRKDDVKKDVRGQVRMRQFVCSREGQRNKKHLMRVDRKREHRRLTRTSCRAKLRVHYNLKTNRWKVVSFVHTHNHELCPSGFRHLISAYRCIRDSDKAQIDSLHAHGVRTCHIMGYLVAQRGGYGNLSFMRKDVYNYLDSKNRLRIKGGDARAALSYLQGKSNSDPVLFCKYTIDEMDRLKTLFWADGACVSDYLCFGDVLAFDTTYKKNKYHHPLVIFSGCNHHSQIVIFGFALVPDETIETYKWVLEAFLQAMFYKQPKSVVTDGDGAMREAIKQVFPNASHRLCAWHLQKNACENVKSASFLQDFQTAVYSNFTPDKFEVYWKKMVSKHGLERNNWVTKTYENKSLWATAYFRDKFFGRIRTTSQCEAINSFIKAYVRKRSSFVELMHNIDQTLREYRNNELIADYKSLFSEPVLTTSLYKIEKDAAKTYT. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11426 546 Pfam MULE transposase domain 312 406 IPR018289 -
Seca4g11426 546 MobiDBLite consensus disorder prediction 28 65 - -
Seca4g11426 546 Pfam FAR1 DNA-binding domain 100 190 IPR004330 -
Seca4g11426 546 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 84 546 IPR031052 GO:0006355
Seca4g11426 546 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11426 Seca-Chr4 253262794 253266781 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g11426 MULE 7.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11426 - - ccaj:109792835 684.485