Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11412 ATGTGCTTCTTCTTCTTCCTCCTCCTCCTTGCAGTTGCACCTCTGCACTCAACCTCATCTGAACCCATCATCAACAGAAGGATCCTCCACCAACCCTTTCAACCCCAAAACACACTCCCTCCTTCTCAGCCTCCAAACTCACCTCCACCTTCTCCTCCTCCTTCACCTTCACCTCCAAACCCAAAGTACCCATTTTCCACAACCACCACACCCAATGCTTCCACACCCTTCTTCCCCACATACCCATCTTCACCACCTCCTCCTGCTCCCTCTGCCTTCGCTTCCTTCCCCGCCAACATCTCCTCCCTTATCCTTCCCCAACCCCCCAAATCCAAATCTTCCTCCGGCAAGCTTCTCGGTGTCGCCATTGCCGCCGTTGTCTGTGCTCTCGCCGTCGTTGCTATCTCTGCCTTCGTCTACTGCCGCCGTCGCCGGAAAAGCTACTCTGCCGATGAGAAGACCCTCAGATCCGACAGCAGTATCCGTCTCTTCCCCCGTGAAGCTCCCGGCGGGAACCGGAAAACGAGGAACGTCTCTTCCACGAGCTCAGAGTTTCTCTACCTTGGCACCATTGTCAACTCTCGCGGTGATGATCTACCTGATCCTCGAGCAACTGGAGGTAACGGTGGCGCTGCTCTGAATCCACGGAAAATGGACTCGCCGGAGCTTCAGCCGCTCCCGCCGCTGGCGCGGCAAGCTTCGAGGCTTCGCGATGAAGTGCCGGTGGCGACGGGGGAGGACGATGAAGAGGAGTTCTACTCGCCGAGAGGGTCTCTGGGTGGCCGTGAAAGCTCCAATGGAACCGGATCGGGTTCTCGGAGAGTGTTCAACGCCATTGCAGCTGAGAATTTCGTGGGTCGAAGCAGCACTGAATCCACTTCCTCTTCTTACTCCTCTTCATCTTCTGCTTCCCCTGATCGTTCTCATTCCATTAGCCTCTCGCCACCGGTGAGCATAAGCCCCAGAAGATCACAACCCAAGTCGCCGGAAACCATACTAACCCACCATTCCCCTCCTCCTCCGCCGGCGGCGGCTGCACCACAATCACTCCCCGCCGGCGATGGCAGAAGCTCGTTCTCCTCATCCACACTCTCCTCCCCGCGAGCTTCCTCAAACCAGCACGTGCAGTCTTCTTCTTCAATGTCTTCAACGCCGGAACGAGGAGTCTTCATCGGGGAGTGTCAGTCACCGTCGCTCTCTCCGCTCTCCCTGTCTCCGAAGAAAAACCCAGATGGGTTGAGTGTTCCACTCGAAAAGACTCAATCTTGTCGTTCATCCCCGAAGAACAACAATGAAGGTTCTTCTCCAAGGTTATCCAATGCTTCTTCGAGTGGCAAGTCCGTGTCTTCATCTTCGGCGTTTTCGCTGCCGTCGCCGGATAAAATGTCGGCGATGCATCAGCATCATGGGTTGGATCAGTCTCCGACTATATCAGATGTATCAGATCGGTATAGGCATTCTCCTCTTTCATCACTGCCTTTGTCACCGACATTGCTTTCATCGCCGGAGAGAGAGTCGAACCCTCAATCAGCACATTCTCGGAAGCATTGGGAGATTCCAGACCTCTTAACTGGTGAATCACCAACTATTCAAACCGTTTCGCTTCAACCTGTGGTGTCTCAAAGGAAACACTGGGAAATTCCGGTTCTTTCAACACCCATTGCTCCTTCAGTTAAAGTTTCAGCTGCTGCTGCTCCTCCTCCACCGCCGCCTCCACCACCACCACCGCCGGTGCAACGACAGAGGAAGCAGTGGGAAGTGCCTTCTCCTTCAACGCCTGTTGGTCAACCCATTTCTAGACCGCCGGAACTGACACCTCCTTCAAGGCCTTTTGTGTTGCAAACCCCAACAACAAAGGTTTCTCCTGTTGAGTTGCCACCTAGTTCTCAGAATTTGGGAGTGATTGAGGAGAATTCTGAGGAGACAGCCAAACCTAAGTTGAAGCCTTTGCATTGGGACAAAGTGAGGGCCAGCTCTGATCGTGAAATGGTGTGGGATCAGTTGAGGTCCAGCTCTTTCAAGTTGAATGAGGAAATGATCGAAACTTTGTTTGTGGTGAACACACCAACCCCAAAACCCAAGGATACTACTCCTCGCTCAGTTCTTGCCCCACAAAATCAGGAGGATAGGGTATTGGATCCTAAAAAGTCCCAAAATATTGCTATCTTGCTGAGAGCGCTTAACGTGACTATAGAAGAAGTGTGTGAAGCACTGTTAGAAGGTATTACTGATACACTTGGAACTGAACTACTTGAAAGCTTGTTAAAAATGGCGCCTAGCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGACTCTCCAACCAAGCTTGGGCCTGCTGAGAAATTTCTGAAAGCAGTGCTTGATGTTCCTTTCGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGCCAATTTTGAGTCCGAAATGGAGTATCTAAGGAAATCCTTTCACACACTGGAGGCTGCCTGTGAAGAGCTACGAAACAGCAGAATGTTCTTGAAACTTCTAGAGGCTGTGCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACAGAGGTGATGCACATGCATTCAAACTTGATACACTTCTCAAGCTGGTTGATGTCAAAGGAGCAGATGGGAAAACCACTCTACTGCACTTTGTTGTACAAGAAATTATTAGAACTGAAGGCGCACGTCTCTCAGGTACCACGAATCAAACACCAAGCACAAATTTGAATGAAGATGCCAAGTGTAGGAAGCTTGGCCTACAAGTAGTATCTAGTCTAAGTTCAGAGTTAGCAAATGTAAAGAAGGCTGCTGCTATGGATTCTGAAGTTCTGAGCAGTGAAGTCTCTAAACTTTCCAAAGGAATTGCACAAATTGCAGAAGTTGTGCAATTAAATGAAAGGGCAGGGTCAGATGAAAGTATTCAGAAATTCACAGAATCAATGAACAGGTTCATGAAAATGGCTGAGGAGGAGATTCTAAAAATTCAAGCCCAAGAAAGTGTTGCATTATCCCTTGTGAAGGAGATCACAGAATATTTCCATGGGAACTTGTCAAAGGAAGAGGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTCTTGACAGTTCTTGACAGGGTATGCAAAGAAGTTGGGATGATAAATGAGAAAACAATGGTTAGTTCTGCATATAGATTCCCTGTTCCAGTGAACCCAATGCTTCCACAACCACTTCCAGGACTACATGGAAAGCGACAGTACAGCTCTTCTGATGATGATAGTCCATCACCTTAG 3273 0.4934 MCFFFFLLLLAVAPLHSTSSEPIINRRILHQPFQPQNTLPPSQPPNSPPPSPPPSPSPPNPKYPFSTTTTPNASTPFFPTYPSSPPPPAPSAFASFPANISSLILPQPPKSKSSSGKLLGVAIAAVVCALAVVAISAFVYCRRRRKSYSADEKTLRSDSSIRLFPREAPGGNRKTRNVSSTSSEFLYLGTIVNSRGDDLPDPRATGGNGGAALNPRKMDSPELQPLPPLARQASRLRDEVPVATGEDDEEEFYSPRGSLGGRESSNGTGSGSRRVFNAIAAENFVGRSSTESTSSSYSSSSSASPDRSHSISLSPPVSISPRRSQPKSPETILTHHSPPPPPAAAAPQSLPAGDGRSSFSSSTLSSPRASSNQHVQSSSSMSSTPERGVFIGECQSPSLSPLSLSPKKNPDGLSVPLEKTQSCRSSPKNNNEGSSPRLSNASSSGKSVSSSSAFSLPSPDKMSAMHQHHGLDQSPTISDVSDRYRHSPLSSLPLSPTLLSSPERESNPQSAHSRKHWEIPDLLTGESPTIQTVSLQPVVSQRKHWEIPVLSTPIAPSVKVSAAAAPPPPPPPPPPPPVQRQRKQWEVPSPSTPVGQPISRPPELTPPSRPFVLQTPTTKVSPVELPPSSQNLGVIEENSEETAKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPTPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCEALLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEMEYLRKSFHTLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGTTNQTPSTNLNEDAKCRKLGLQVVSSLSSELANVKKAAAMDSEVLSSEVSKLSKGIAQIAEVVQLNERAGSDESIQKFTESMNRFMKMAEEEILKIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINEKTMVSSAYRFPVPVNPMLPQPLPGLHGKRQYSSSDDDSPSP. 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11412 1090 MobiDBLite consensus disorder prediction 1068 1090 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 560 608 - -
Seca4g11412 1090 SMART it6_source 637 1052 IPR015425 -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 286 332 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 33 69 - -
Seca4g11412 1090 PANTHER FORMIN-RELATED 396 1084 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca4g11412 1090 MobiDBLite consensus disorder prediction 415 458 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 196 273 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 37 65 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 333 347 - -
Seca4g11412 1090 ProSiteProfiles Formin homology-2 (FH2) domain profile. 637 1063 IPR015425 -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 562 581 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 286 525 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 594 608 - -
Seca4g11412 1090 SUPERFAMILY Formin homology 2 domain (FH2 domain) 567 1050 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 353 386 - -
Seca4g11412 1090 Pfam Formin Homology 2 Domain 639 1037 IPR015425 -
Seca4g11412 1090 Gene3D Formin, FH2 domain 631 1047 IPR042201 -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 469 507 - -
Seca4g11412 1090 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11412 Seca-Chr4 253084429 253089465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11412 585 1079 FH2 protein (formin) Gene Family AT3G25500 75.551 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11412 - - gmx:100802678 1364.75