Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11408 ATGAACACTCAGTCGCAGCAGCAACAACAACAAGGCCAATACAAAAAACGAGAATTCAAGGAAGAAGAAGAAGAAAACCGGTTGCTGCAAAGCGATTGTGAGACAATACCATTATCCTCACCCCACTCATCACCATTAACACTTGATGATGGAAACGCAGAGGATTTCATTTATGCAGCAAAGGACAAGGTCCAAATATTCGACGTGGAGTCCGCCGGCGCCACCGGGTCCACGGCGGTGCCACCGTTTTCTTGGAAGAAGCTGTGGCTGTTCACAGGGCCAGGGTTGCTTATGAGCGTGGCGTTTTTGGACCCAGGGAACTTGGAAGGTGACCTTCAAGCTGGTGCCATTGCAGGGTACTCTCTGCTTTGGCTATTGATGTGGTCAACCATAATGGGGCTTCTCATACAGCTTCTGTCAGCGAGGCTTGGCGTTGCCACGGGGCGCCACCTGGCAGAATTGTGCAGGGAGGAGTATTCCAATTGGGCAAGGCTAGTGCTTTGGTTCTTGGCTGAGTTGGCTTTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAAGATTCTTAGCCATGGGATTCTCCCTATTTGGGCTGGTGTGGTAATCACAGCCTTTGATTGTTTCTTCTTTCTGTTTCTTGAGAATTATGGAGTGAGGAAGTTGGAAGGTGTTTTTGCAGTTTTCATTGGAACTATGGCCTTTTCTTTTGCATGGATGTTCTTTGATACAAAGCCAAATGAAGAAGAACTTATGATGGGTCTTTTGATCCCAAGAGTTAGCTCAAAAACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTTATAACCCCACACAATGTATTCCTACATTCTGCATTGGTACAATCAAGAGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATCAATTACTACACAATTGAGTCGTCAATTGCACTTTTAGTCACCTTGGTGATCAATCTATTTGTGATAACTGTTTTCGCAAGGGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTTGAGGAGAGGTATGGAGGAGGATTGTTTCCAATTCTCTATATATGGGGTATTGGTTTATTAGCAGCTGGACAAAGTAGTACCATCACTGGTACATATGCAGGGCAGTTTATAACTGAGGGTTTTCTGAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTGTGGCAATTGTTTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTCCAAGCAATACAGATTCCTTTTGCACTTATCCCTCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGTCCTTCAGAATTGGACCAATAGTAGAGAGGGTGGCTTGGACTGTGGCTGTGCTGGTGATATTGGTTTATGGATATATGTTATTAGGTTTCTTCCTCTCTGAAGTGAAGGGACTATTGTTTGGTTTTTTAGTCTGCCTTGGCGCTTCAGCATGGATTGCATTCATTGCATATCTTGTTAAACATAGTGGTGCCATTCCTTCTATTCTGGTGAGGTCCCCTAATTCCAAAGGCTTTACTCTTGCTGGAAACTAA 1647 0.4384 MNTQSQQQQQQGQYKKREFKEEEEENRLLQSDCETIPLSSPHSSPLTLDDGNAEDFIYAAKDKVQIFDVESAGATGSTAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIAIKILSHGILPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAVFIGTMAFSFAWMFFDTKPNEEELMMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYTIESSIALLVTLVINLFVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGSFRIGPIVERVAWTVAVLVILVYGYMLLGFFLSEVKGLLFGFLVCLGASAWIAFIAYLVKHSGAIPSILVRSPNSKGFTLAGN. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11408 548 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 86 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 18 525 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 Hamap Divalent metal cation transporter MntH [mntH]. 74 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 NCBIfam Nramp family divalent metal transporter 93 462 - -
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 271 294 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 440 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 197 216 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 406 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 378 397 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 222 243 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 PRINTS Natural resistance-associated macrophage protein signature 167 193 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g11408 548 MobiDBLite consensus disorder prediction 14 28 - -
Seca4g11408 548 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g11408 548 Pfam Natural resistance-associated macrophage protein 109 470 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11408 Seca-Chr4 253005406 253008566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11408 58 527 Inorganic Solute Cotransporters AT1G47240 75.424 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11408 K21398 - gmx:100801411 926.776