Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11398 ATGGCGTATGTCAAGGCTCAGAAATCAAAGGCGTACTTTAAGAGATATCAAGTGAAGTTTAAGAGAAGAAGGGAGGGAAAGACTGATTACCGAGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAGTACAACACCCCAAAATACCGATTTGTGGTTCGATTTACGAACAAGGATATCATTGCACAAATAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCATATGCCCATGAACTGCCACACTATGGTCTTGAAGTAGGCCTTACAAACTATGCGGCAGCTTACTGCACTGGACTTCTCTTGGCTCGTCGCGTCCTTAAAAGGCTTGAAATGGATGAGGAGTATGAGGGGAATGTGGAGGCTACTGGAGAGGATTTTTCAGTGGAGCCGGCTGATACCAGGAGACCATTCCGTGCTCTTCTTGATGTTGGTCTAATTAGGACCACAACTGGCAATCGTGTCTTTGGTGCACTTAAGGTACTCAATAATTGTAGTAGTGACAAAAGATTTGCTGGTTTTGATAAGGAGAAGAAGGATCTTGATGCTGAGGTTCACCGCAAATACATCTTTGGTGGACATGTTGCTACCTATATGAAGGCATGGACAAAGACTTTATTTAGTACCACTTTGATGGAAGATGAACCAGAGAAATACCAGTCACACTTTAGTGAATATATCAAGCGAGGAATAGAGCCTGATGGACTTGAGGAGCTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCAACTGCAAAGAAATCAGAGAAGCAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGGCTAAGTTGATTGCACGCTTGCAGGCTCTCAACTCTGCTGCTGAAGGTCCTGATGATGATGATGATGATGAGTGA 918 0.4401 MAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIISASIAGDIVLAAAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKRLEMDEEYEGNVEATGEDFSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKVLNNCSSDKRFAGFDKEKKDLDAEVHRKYIFGGHVATYMKAWTKTLFSTTLMEDEPEKYQSHFSEYIKRGIEPDGLEELYKKVHAAIRADPTAKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAEGPDDDDDDE. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11398 305 Coils Coil 274 294 - -
Seca4g11398 305 SUPERFAMILY Translational machinery components 11 255 - -
Seca4g11398 305 Gene3D - 1 295 - -
Seca4g11398 305 MobiDBLite consensus disorder prediction 253 274 - -
Seca4g11398 305 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 PRINTS Ribosomal protein L5 signature 210 230 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 295 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca4g11398 305 FunFam 60S ribosomal protein L5 1 295 - -
Seca4g11398 305 Pfam Ribosomal L18 C-terminal region 239 292 IPR025607 -
Seca4g11398 305 CDD Ribosomal_L18_L5e 41 163 - -
Seca4g11398 305 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11398 Seca-Chr4 252921457 252924173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11398 1 295 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 77.333 3.01e-169 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11398 K02932 - gmx:100805868 503.442