Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11361 ATGGAGGACGATTGGGATCTCCACGCCGTGGTCAGAGGCTGCACCACCGTTACCTCCTCTTCCTCCTCCACCACCACCACCACTGCCTCCTCTGTATCTTCCTCTGCCCTTGGGACCTGTTACCAACCTTCTTCAACTACAGGCACCTTCTTCCCTATCTTCCCTGCAGAACAAGCAGGGCGAGTTTTGTCCCTTTCAAACCCTTTTGAAGCAAAGAATTCCATTGAAGAATTGCATGAGCTTTACAAGCCTTTCTTCCCCAAATCACACCCTCCTTCCTTGCAGACCTCTTCTCCTTTGTCTTCCTTCTCTTACTCATCTGCACCCAAATCACCTCAGCCACAGCAAAAACAACAGCAGCAGCAGCAGCCAAGTAAGCAGTCTCACCATGCTGGTTCTGCCTCCACCCCAAGATCTAAAAGAAGGAAGAATCAGCTTAAGAAGGTTTGTCAAGTGGCAGCTGAGAATCTCTCTTCAGATATATGGGCATGGAGGAAATATGGTCAAAAACCTATCAAAGGGTCACCATATCCAAGGGGATATTATAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAAATCAGACCCAACAATGTTCATAGTCACCTACACAGGGGAGCATAGTCACCCTGCTCCTACTCATCGAAATTCCCTTGCTGGCTCCACACGCCAGAAGCCACTAACACCTCAATCTGCCACCGCCGGAGACTCTGCCAAATCCCCGGCAAAACCCGTTTCTCCGGCGACCTCAGGGGCGGAGGAAGAAGAGGCTGCACACCTGAGTGCAACAAAGTCAGAGAGCAAAGAGGAGGATATGGAAGATTTGATGAATGATGATGATGAAGAAAATAATGAATTTGGATTTGGGTTATCAGATATGGTGGTAACAGATGATTTCTTTGAAGGTTTAGAAGAATTGACAGGGTCAGGATCAACTACTGGAGACTCTTTTGTAGACCCCTTTGCAGCTAACAATAGCATTGCTCTTCCTTCTTGGGTGGCCAATAATGCTGCCACTGCCGCTGGTGGTAGCTGA 1056 0.482 MEDDWDLHAVVRGCTTVTSSSSSTTTTTASSVSSSALGTCYQPSSTTGTFFPIFPAEQAGRVLSLSNPFEAKNSIEELHELYKPFFPKSHPPSLQTSSPLSSFSYSSAPKSPQPQQKQQQQQQPSKQSHHAGSASTPRSKRRKNQLKKVCQVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLTPQSATAGDSAKSPAKPVSPATSGAEEEEAAHLSATKSESKEEDMEDLMNDDDEENNEFGFGLSDMVVTDDFFEGLEELTGSGSTTGDSFVDPFAANNSIALPSWVANNAATAAGGS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11361 351 SMART WRKY_cls 158 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g11361 351 MobiDBLite consensus disorder prediction 89 147 - -
Seca4g11361 351 MobiDBLite consensus disorder prediction 90 134 - -
Seca4g11361 351 MobiDBLite consensus disorder prediction 212 296 - -
Seca4g11361 351 SUPERFAMILY WRKY DNA-binding domain 154 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g11361 351 MobiDBLite consensus disorder prediction 216 244 - -
Seca4g11361 351 Coils Coil 272 292 - -
Seca4g11361 351 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g11361 351 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g11361 351 FunFam WRKY transcription factor 22 142 212 - -
Seca4g11361 351 MobiDBLite consensus disorder prediction 264 278 - -
Seca4g11361 351 MobiDBLite consensus disorder prediction 18 38 - -
Seca4g11361 351 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g11361 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 316 IPR044810 GO:0003700
Seca4g11361 351 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11361 Seca-Chr4 252330347 252332158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11361 1 350 WRKY Transcription Factor Family AT4G01250 47.619 1.77e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g11361 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11361 K13425 - gmx:100815829 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11361 4 252330347 252332158 Seca10g03807 10 78716422 78718038 ECH
Seca4g11361 4 252330347 252332158 Seca4g11361 4 252330347 252332158 ECH
Seca2g00919 2 14175900 14177600 Seca4g11361 4 252330347 252332158 ECH
Seca4g08708 4 207391858 207397887 Seca4g11361 4 252330347 252332158 ECH
Seca4g11361 4 252330347 252332158 Seca2g00919 2 14175900 14177600 PCT