Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11353 ATGGTGTCCGTGAACCCTAACCCAGCTCAAGGCTTTTACTTCTTCGATCCTTCCAATATGGCCCTTCCCGGTGTCAACCCTCTTCCGGCCCCGCCTCCTCCCCAGCCTCCCGCTCCCGGCGCCGCCGTTTCCACCACCGCCGAGGATCCGAGTAAGAAGATCCGAAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGTGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCACACCCATACCCTCAAAAAGCTCCCAAAATCGCAGCTCCTACTGTATCCCAAGTCACAGGGCCATTGCAATCTTCATCGGCTTTTATTGAACCTTCATACATTTATACCCCAGATTCATCATCTGTACTTGGAACACCAGTTACTAGTGTGCCTTTATCTTCTTGGAATTATAATGCTATACCACCAGCCAGTGTGCCACAAGTGGCTAGAGGTTTTGCTTGTTCTGAAGAAATTTTCATTGTTTGTTTGTTAGATGACATGGGATTGACAGGAGCTGGACAAGCTGTTCCTCTTAATTGTTGCTATAGCAGCAGTAATGAGAGCATCCATCGAACTTGGCCAAGTAGCAAAGGAATTAATCAACGTGACCAGGGCCAGCCAATTAAAGTAATGCCAGATTTCGCAAAAGTATACAACTTCATCGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACACAGACTAAAACAGATGGACCCAATAAATGTGGAAACGGTAATTAATATCAAGTCCTTCATTGCATTGTTGTTGATGAGAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAAGCTACTTTCATCATATGATGCTGGTTGTGAGAAAGCAAAGTTTGTTAATTCTAGCAACAATTCCCTCAGTGGTAAATCTGGGAGTGCTGTTCTATCTGCTTAA 1083 0.4386 MVSVNPNPAQGFYFFDPSNMALPGVNPLPAPPPPQPPAPGAAVSTTAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKIAAPTVSQVTGPLQSSSAFIEPSYIYTPDSSSVLGTPVTSVPLSSWNYNAIPPASVPQVARGFACSEEIFIVCLLDDMGLTGAGQAVPLNCCYSSSNESIHRTWPSSKGINQRDQGQPIKVMPDFAKVYNFIGSVFDPNSTNHLHRLKQMDPINVETVINIKSFIALLLMRNLSINLMSPEFEDHKKLLSSYDAGCEKAKFVNSSNNSLSGKSGSAVLSA. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11353 360 MobiDBLite consensus disorder prediction 115 137 - -
Seca4g11353 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 62 111 IPR006447 GO:0003677
Seca4g11353 360 MobiDBLite consensus disorder prediction 24 57 - -
Seca4g11353 360 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Seca4g11353 360 Gene3D - 67 114 - -
Seca4g11353 360 ProSiteProfiles SANT domain profile. 62 115 IPR017884 -
Seca4g11353 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Seca4g11353 360 PANTHER SWI/SNF COMPLEX-RELATED 43 318 - -
Seca4g11353 360 FunFam protein REVEILLE 6 isoform X1 66 114 - -
Seca4g11353 360 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Seca4g11353 360 SUPERFAMILY Homeodomain-like 58 114 IPR009057 -
Seca4g11353 360 SMART sant 63 111 IPR001005 -
Seca4g11353 360 CDD SANT 66 109 IPR001005 -
Seca4g11353 360 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11353 Seca-Chr4 252179734 252186392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g11353 Myb_DNA-binding 3.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11353 - - gmx:778090 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11353 4 252179734 252186392 Seca4g11353 4 252179734 252186392 ECH
Seca2g00926 2 14881171 14886267 Seca4g11353 4 252179734 252186392 ECH
Seca4g11353 4 252179734 252186392 Seca2g00926 2 14881171 14886267 PCT