Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11352 ATGTCAGTGTACGACGCAGCTTTCGTCGACACTGAGCTTTCCAAACGCACCTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTCGTCGGTTCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCACCTCTCGCCGCCGCAACAACAACAACAACACCAAAACCTCCACCAAGCTCCGTCACCCTTCCTCCGCCGCCACCCCCGTCGTCTCCAAGGAAATCCAGGAGATCGTCCACGTCCCTCCCTTGCCGGAGATCCACGTCGACACCGTCAAGCTTGAGCTCCTCCATCACCGTGCCTCCACCAGCGGGGAGAGCAAGGGAACCGCCAGCGTCTGTGAAACGGCGTCGTCTTTGGGGAGCGGTAGCATTGGGCCCGAAGTTTCGCATCTTGGTTGGGGGAGATGGTATACGTTGAGGGAACTCGAAGCTGCCACCAATGGTTTGTGTGAAGAAAATGTGATTGGAGAAGGTGGCTATGGAATCGTCTACCGTGGACTTCTCCCTGATGGTACCAAAGTTGCTGTCAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGCTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATATTGATAATGGCAATCTGGAACAATGGCTGCATGGGGATGTTGGAAACGTAAGCCCTATGACATGGGATATCCGGATGAACATTATATTGGGCACAGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTGTTCACCGAGACGTGAAATCAAGCAACATCCTCATTGATCGCCAATGGAACCCAAGAGTTTCTGATTTTGGGCTTGCTAAGCTTTTGCATTCTGATCACAGTTATGTCACCACTCGGGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGACGTTTATAGCTTCGGGATACTTATCATGGAAATAATCACTGGGAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAATCTATGGTTGGGAATCAAAAATCTGAGGAAGTAGTTGATCCTAAGCTTCCTGAGAAGCCATCTTCAAAGGCACTTAAACGTGCTCTCTTGGTTGCTCTTCGATGTGTTGACCCTGATTCATCAAAGAGACCTAAAATAGGACATGTGATCCACATGCTTGAGGCTGACGACCTCTTATTCCATGATGATCGAAGGATCAGGGGAGAATCTTCCCATTCGCATCGTGATCATCGCCGAGAGCACAGGGACTCAAGTTTAGATAAAAATCCAAGAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGAGATCACCATCAGCCCACTAGGTGGGGAAGATAG 1464 0.4884 MSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVITLFLLSLCLTSRRRNNNNNTKTSTKLRHPSSAATPVVSKEIQEIVHVPPLPEIHVDTVKLELLHHRASTSGESKGTASVCETASSLGSGSIGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYIDNGNLEQWLHGDVGNVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPRVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVGNQKSEEVVDPKLPEKPSSKALKRALLVALRCVDPDSSKRPKIGHVIHMLEADDLLFHDDRRIRGESSHSHRDHRREHRDSSLDKNPRGGEITDQSEDDSSRDHHQPTRWGR. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11352 487 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Seca4g11352 487 PANTHER OS01G0323000 PROTEIN 8 454 - -
Seca4g11352 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Seca4g11352 487 Gene3D Transferase(Phosphotransferase) domain 1 230 438 - -
Seca4g11352 487 MobiDBLite consensus disorder prediction 440 487 - -
Seca4g11352 487 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Seca4g11352 487 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Seca4g11352 487 SMART serkin_6 154 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11352 487 SUPERFAMILY Protein kinase-like (PK-like) 132 426 IPR011009 -
Seca4g11352 487 Pfam Protein kinase domain 157 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11352 487 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
Seca4g11352 487 CDD STKc_IRAK 160 426 - -
Seca4g11352 487 ProSiteProfiles Protein kinase domain profile. 154 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11352 Seca-Chr4 252166485 252169895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11352 26 426 Trihelix Transcription Factor Family AT5G38560 39.066 4.69e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca4g11352 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11352 - - gmx:100777348 744.191