Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11350 ATGCCAAAAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGAAAATCTGTACTTATCACGAAAGGTGTTGGACTGGATTTTTCTCATCGGATTCTGAAATCTCTTTTAGTAGTCAATTTGCAAAGTATACTTCTTACTCATCAGTTATTTTTCCAATGCAGGTGATGTCCATTAAAGACATTATACGGCCTCCACAGAAGGAGAACTTCAATGATGTGTACATTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAATACGTTCCAATCAGCCATTAACAGATGATCATTGTCGGTATTTTCTGTATCAGCTGTTACGAGGGCTCAGATATGTACATTCAGCAAATGTTTTGCATCGTGATCTAAAGCCTAGCAATTTGCTACTGAATGCCAATTGTGACCTTAAGATTGGAGACTTTGGTCTGGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCCGAATTGCTTCTTAATTGTTCAGAATATACAGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGTGAGGTCATAACAAGAAAACCCCTCTTTCCGGGCAAAGATTATGTTCATCAGCTGAGACTGATCACAGAGTTGATAGGTTCACCTGATGATGCCAGCCTTGGATTTCTACGCAGCGAAAATGCTCGTAGATACGTAAGACAGCTTCCACAATATCCAAAGAGAGACTTTTCTGCTAGATTTCCCAGTATGTCTGCTGGTGCTATTGATTTGCTAGAGAAGATGCTTGTCTTTGATCCAAACAAGCGCATTACAGTTGATGAGGCATTGTGCCACCCATACATGGCACCTCTCCATGATATCAATGAAGAACCTGTATGCGGAAAACCTTTCAGTTTTGACTTTGAGCAACCGTCATTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCTGACCCACCAATTTACTGA 1002 0.4042 MPKGPYEKLNFFGTWIMKICTYHERCWTGFFSSDSEISFSSQFAKYTSYSSVIFPMQVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLRYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEVITRKPLFPGKDYVHQLRLITELIGSPDDASLGFLRSENARRYVRQLPQYPKRDFSARFPSMSAGAIDLLEKMLVFDPNKRITVDEALCHPYMAPLHDINEEPVCGKPFSFDFEQPSFTEEDIKELIWRESVKFNPDPPIY. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11350 333 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11350 333 Gene3D Phosphorylase Kinase; domain 1 57 328 - -
Seca4g11350 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca4g11350 333 SMART serkin_6 6 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11350 333 Gene3D Transferase(Phosphotransferase) domain 1 85 306 - -
Seca4g11350 333 FunFam Mitogen-activated protein kinase 83 312 - -
Seca4g11350 333 Pfam Protein kinase domain 71 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11350 333 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 57 286 - -
Seca4g11350 333 SUPERFAMILY Protein kinase-like (PK-like) 58 292 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11350 Seca-Chr4 252124252 252130083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11350 57 328 MAP Kinase Gene Family AT4G01370 87.868 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca4g11350 Pkinase 7.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11350 K20600 - gmx:100779469 537.339