Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11344 ATGGCAGCTGTTAGGTTTTCGCATATAAGATGTCTACATAGTTCAATCAAGGGTTCTTTGAACATGGAATCAGTTCAACAATTCCACCATCACCATAATGTGGCTACGAACCTCACAAGAATTGCAAGGTTGCCTAATGATTTGTTCAACCGTTCTTATTCCAAAGGAGAGTTACAGTCACCTCAGATATTTGCTCAGAATCAGTTTAGTAATTTGGCTTCTGAATCACTTGTTAGTAGTCACCTCTTTAGTACCAAAACCAATGCCTCATTTAATCCTAGATTCTCTAGCTCTTGTCTTCGTAGTACTCTTCCTTTTGCTTCCACGACCCACTTGTTGAATTGTCAAATGTTTTCATCGTCTTTGGGTGGCAAAGGAAGCAGGGATGGTGACACAGAAGTTTCTGCTGGGTCTGGTGTAAGTGACATGAATGCTAGTGGTGATTCTGTTGTTCCAGGTGATTGGGCTGAGAGGATTAAAGATACTTGGAAGAGTGTGGTAGAGATGGCATCAAATGCTGGGGAAAAGGTTAAAGAAGCTTCTGATGATCTCACTCCATATGCTCAACAGTTGCTTGATTCACATCCATATCTTAACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTTTAATAGCGTGGTTCTTGATGCCTAGGATTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCTGTTGCTCTATTTCCAGGAAGCATATCTTGGGAGTCAGTTCCTTATGAGAAAAGTTTTTGGGGTGCTATGGAAGACCCGGTGCGATATTTAGTTACCTTCATTGCATTTTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCTCACAATATCTTGCACCTGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACCAATGTTTTCGCACGGACGTTGTCCAGTCAAAGTTTACTTGGACTCGATAGGGAGAAATTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTACAATCTATTGTAACCGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAGAGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCTATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCATTGCTGAGTGCTGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGTGCCATTATCACCAAAATTCCCCTGCAAATTGAAGATTTAAGTAAGATTCCCCAGATATCGAATGATGTAAAAAGCATGTTAAGATCAAATGTGAAGGTTTTCTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAATCTCAAACACATGGTACTTCACTCATCTCGCAAAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCAGTTCAGATCATTAAAAGTCATGGTGTTGCTCTTGGAAGCACATGGAATGACATGTCTAGTAAGTAA 1656 0.407 MAAVRFSHIRCLHSSIKGSLNMESVQQFHHHHNVATNLTRIARLPNDLFNRSYSKGELQSPQIFAQNQFSNLASESLVSSHLFSTKTNASFNPRFSSSCLRSTLPFASTTHLLNCQMFSSSLGGKGSRDGDTEVSAGSGVSDMNASGDSVVPGDWAERIKDTWKSVVEMASNAGEKVKEASDDLTPYAQQLLDSHPYLNKVVIPVGGTLTATLIAWFLMPRILRKFHKYAMQGPVALFPGSISWESVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSSQSLLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIPQISNDVKSMLRSNVKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMVLHSSRKDELYSAEQDILLQAVQIIKSHGVALGSTWNDMSSK. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11344 551 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 374 IPR011014 GO:0016020
Seca4g11344 551 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 155 544 - -
Seca4g11344 551 MobiDBLite consensus disorder prediction 122 149 - -
Seca4g11344 551 Pfam Mechanosensitive ion channel 333 540 IPR006685 GO:0016020|GO:0055085
Seca4g11344 551 SUPERFAMILY Sm-like ribonucleoproteins 375 440 IPR010920 -
Seca4g11344 551 Gene3D - 291 390 - -
Seca4g11344 551 Gene3D - 391 439 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11344 Seca-Chr4 252024152 252030667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11344 155 547 Mechanosensitive Ion Channel Family AT4G00290 67.430 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11344 K22047 - gmx:100789047 851.662