Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11339 ATGGCATCTACCATAGATGGAGCCTCTCCTTTCTCTCCTTCCAAACTAACCTCACGATGGGCCAACCATGTTTTCTTGAGTTTCAGGGGTGATGACACTCGCAAAGGTTTCACAGACCATCTTTTTGCTTCACTAGAGAGAAAGGGGATCAAAACTTTCAGGGATGATCATGATCTTGAGAGGGGAGAAGTGATATCACTCGAACTCATGAAAGGCATTGAAGAGTCCATGTTTGCACTGATCATTCTTTCACCAAACTATGCTTCCTCAACATGGTGTTTGGATGAGCTCCAAAAGATTCTTGAATGCAAGAAGACTTTTGGTCAAGAAGTTTTTCCAATCTTCTATGGTGTAGACCCCTCTGATGTAAGGCACCAAAGAGGAAGCTTTGCCAAAGCTTTCAGAGAGCATGAAGAGAAATTCAGTAAAGAAAGAAAGAAAGTGGAAAGATGGAGAGATGCCTTGAGAGAAGTAGCAAGCTACTCTGGTTGGGACTCCAAGGATCGGCATGAGGCAAAACTGATTGAAACAATTGTTGAACATATACAGAAAAAATTGATTCCTAAATTACCATCTTGCACAGATAACCTTGTTGGGATTGATTCACGGATAAAGGAAGTACATTCACTCATAGGCATGTGGCTAAATGATGTACGCCTCATAGGCATATGGGGCATGGGCGGTATAGGCAAGACAACTATTGCTAGATTAGTCTACGAAGCAATCAAAGAGAAATTCAAGGTTAGTTGCTTTCTTGCAGACATTAGAGAGGTGTCGAAGACAAAAGGCTTAGTTCACATTCAAAGGGAACTTCTTTCTCATCTTAATATAAGAAGTAGTGATTTTAATAATCTTCATGATGGCAAAAAGATATTAGCAAACTCTTTAAGCAACAAAAAGGTTCTTCTTGTTCTTGATGATGTAAGTGAATTAAGTCAGTTGGAGAGTTTAGCTGGGAAGCAAGAATGGTTTGGTCCAGGAAGCAGAGTTATAATCACAACCAGAGATAAGCACCTGCTAATGGCACATGGAATGAAAGTAATTTATAAAACTAGAGGCCTAGTCCAAAATGAAGCCCTTAAGCTCTTTTGTTTGAAAGCCTTTAAACAAGATCAACCTGAAGAAGAGTATTTGAATTTGAGCAAAGAAGTGGTTGAATATGCAAGAGGCCTTCCATTGGCACTTGAGGTGTTGGGTTCCCATCTTCATGGAAGAACCGTTGAGGTTTGGAATAGTGCTCTAAAACAAATAAGAAGTATGCCACACTCCAAGATCCAAGATACACTGAAAATAAGTTATGACAGTTTAGAATACTGGGAGAAAAATATGTTTCTAGATATTGCCTGTTTCTTCAAGGGGATGGACATAGATGAAGTAATAGATATATTAGAAAATTGTGGGGATCATCCCAAAATTGGAATTGACATTTTGATTGAAAGATCATTGGTCACTCTAGATAGGAGGGACAATAAGTTGGGGATGCATGATTTGCTTCAAGAAATGGGCAGGAATATTGTATTTCAAGAATCTCCAAATGATCCTGGCAGACGTAGTAGGTTGTGGTCTCAAAAAGACATTAATCAAGTATTGACAAAAAATAAGGGAACTGATGAAATTCAAGGCATAGTTCTGAACTTGGACCAACCATATGAAGCACACTGGAGCACCGAAGCCTTCTCCAAGACAAGTCAACTAAGATTACTCAAGTTATGTAACATACAACTTCACCTTGGCCTCAACTGCCTTCCTAGCGCACTAAAAGTTCTTGATTGGAGAGGATGTCCTTTGAAAACTCTGCCACTTACTAATCAACTGGATGAACTTGTTGACCTCAAATTGTCTTATAGTGAAATAGAACAACTTTGGCATGGGACAAAGTTTCTTGAAAAGCTGAAGTCCATCAATTTGAGTTTTTCCAAGAATATAAAGCGATCCCCTGACCTTGGTGGGGTTCCAAATCTTGAATCATTGGTTCTTGAAGGATGTACGAGCTTAACTGAGGTGCATCCATCCCTTGCACGCCACAAGAAACTTGTTCTATTGAATTTGAAAGACTGCAAAAGACTCAAAGCTCTTCCATGTAAAATGGAGATGGGTTCCTTGACGGATTTAAATCTTTCCGGTTGCTCTGAATTTAAACATCTTCCAGAGTTTGGGGAAAGCATGGAAAATCTGTCAAAGCTTTCTTTAAGGGGCACTGCTATAACAAAACTACCCTCATCATTGGGATGTCTAGTTGGCCTTGCTCTCTTGAATTTAAAGAATTGCAAGAATCTTGTTTGCCTTCCAGATACCACTAGTGAATTGAAGTCCCTCTTAACTTTGGATGTTTCTGGCTGCTCAAAACTTCGTAGCTTGCCTGAGGGTTTAAAGGAAATAAAGTGTTTAGAGGAACTTTGTGCAGGTGGAACTGCTATTGAAGAGCTACCTCCATTTGTCTTTTATCTAGAAAACCTTAAAGTAATGTCATTTGCAGGGTGCAAAGGGCCAGTGTCTAACTCAGTGAATAAGTTTTTTCTCCCTTTTAAGTGGCTGTTTGGGAGTCAACAGGATCCTATTGGCTTTAGATTGCCACCTTCTAAATTGTTTCTACCCTCTTTGACGCAATTAAATTTAAGCTACTGCAATCTATCTGAAGAATCAATGCCAGATGAGTTTTGCTGCTTATCTTCATTGATTATTTTAAATCTCACTGGCAACAATTTTGTTAGCCCACCAAGTATCATTTCCAAACTTCCAAAGCTTGAATATCTTCGCCTGAACTGGTGCAACAAGCTTCAACGGTTGCCAGAGCTTCCATTAAGCATACAAGAATTGGATGCAAGTAATTGTGTTTCATTGGAAACTTCCAAATTGAATCCATCAAGGCCATGCAGCCTCTTTGCAACACAACGACAATGGCGCTTGCGCTTACCTAGAGAAGTGAAGATCTTTTTGGAGGAACTCCATCTCCCCAGAGCAAGATTTGACATGCTTATCACAGGGAGTGAAATTCCATCATGGTTTGTCCCTCAAAAATGTGTTTCCTTTGCAAAAATACCAGTCCCTAATAATTGCCCTCCAACTGAATGGGTGGGATTTGCTTTGTGTTTCATGTTAGTAAGTCATGCTGACCCTGAGTTGTGCCGCCATGAAGTTGATTGTTACTTGTTTGGACCTAAGGGTAAGTTGTTTATTTCCTCCAGGGATTTACCTCCTATGCAGCCACATTGCCCTCACCTTTATATTCTCTATTTATCCGTTGATGAATGTCGTGACAGATTTTATGAAGGTGGGGACTTCAGTGAAATTGAATTTGTATTGAAATGTTATTGTTGTCATTCATTGCAAATAGTGAGGTGTGGGTGTCGTTTGGTATGTAAGCAAGATGTTGAAGATATTTACGGAAACCATTTCTAG 3399 0.3963 MASTIDGASPFSPSKLTSRWANHVFLSFRGDDTRKGFTDHLFASLERKGIKTFRDDHDLERGEVISLELMKGIEESMFALIILSPNYASSTWCLDELQKILECKKTFGQEVFPIFYGVDPSDVRHQRGSFAKAFREHEEKFSKERKKVERWRDALREVASYSGWDSKDRHEAKLIETIVEHIQKKLIPKLPSCTDNLVGIDSRIKEVHSLIGMWLNDVRLIGIWGMGGIGKTTIARLVYEAIKEKFKVSCFLADIREVSKTKGLVHIQRELLSHLNIRSSDFNNLHDGKKILANSLSNKKVLLVLDDVSELSQLESLAGKQEWFGPGSRVIITTRDKHLLMAHGMKVIYKTRGLVQNEALKLFCLKAFKQDQPEEEYLNLSKEVVEYARGLPLALEVLGSHLHGRTVEVWNSALKQIRSMPHSKIQDTLKISYDSLEYWEKNMFLDIACFFKGMDIDEVIDILENCGDHPKIGIDILIERSLVTLDRRDNKLGMHDLLQEMGRNIVFQESPNDPGRRSRLWSQKDINQVLTKNKGTDEIQGIVLNLDQPYEAHWSTEAFSKTSQLRLLKLCNIQLHLGLNCLPSALKVLDWRGCPLKTLPLTNQLDELVDLKLSYSEIEQLWHGTKFLEKLKSINLSFSKNIKRSPDLGGVPNLESLVLEGCTSLTEVHPSLARHKKLVLLNLKDCKRLKALPCKMEMGSLTDLNLSGCSEFKHLPEFGESMENLSKLSLRGTAITKLPSSLGCLVGLALLNLKNCKNLVCLPDTTSELKSLLTLDVSGCSKLRSLPEGLKEIKCLEELCAGGTAIEELPPFVFYLENLKVMSFAGCKGPVSNSVNKFFLPFKWLFGSQQDPIGFRLPPSKLFLPSLTQLNLSYCNLSEESMPDEFCCLSSLIILNLTGNNFVSPPSIISKLPKLEYLRLNWCNKLQRLPELPLSIQELDASNCVSLETSKLNPSRPCSLFATQRQWRLRLPREVKIFLEELHLPRARFDMLITGSEIPSWFVPQKCVSFAKIPVPNNCPPTEWVGFALCFMLVSHADPELCRHEVDCYLFGPKGKLFISSRDLPPMQPHCPHLYILYLSVDECRDRFYEGGDFSEIEFVLKCYCCHSLQIVRCGCRLVCKQDVEDIYGNHF. 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11339 1132 Pfam C-JID domain 994 1125 IPR045344 -
Seca4g11339 1132 Pfam Leucine Rich Repeat 608 626 IPR011713 -
Seca4g11339 1132 Gene3D - 354 437 IPR042197 -
Seca4g11339 1132 FunFam Disease resistance protein (TIR-NBS-LRR class) 355 437 - -
Seca4g11339 1132 PRINTS Disease resistance protein signature 767 783 - -
Seca4g11339 1132 PRINTS Disease resistance protein signature 388 402 - -
Seca4g11339 1132 PRINTS Disease resistance protein signature 220 235 - -
Seca4g11339 1132 PRINTS Disease resistance protein signature 295 309 - -
Seca4g11339 1132 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Seca4g11339 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Seca4g11339 1132 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 717 IPR044974 GO:0006952
Seca4g11339 1132 Gene3D - 186 348 IPR027417 -
Seca4g11339 1132 Pfam NB-ARC domain 217 436 IPR002182 GO:0043531
Seca4g11339 1132 SUPERFAMILY RNI-like 857 1082 - -
Seca4g11339 1132 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Seca4g11339 1132 Pfam TIR domain 23 199 IPR000157 GO:0007165
Seca4g11339 1132 Gene3D Ribonuclease Inhibitor 542 720 IPR032675 -
Seca4g11339 1132 Gene3D Ribonuclease Inhibitor 721 966 IPR032675 -
Seca4g11339 1132 SUPERFAMILY L domain-like 507 828 - -
Seca4g11339 1132 SMART till_3 21 161 IPR000157 GO:0007165
Seca4g11339 1132 Gene3D - 16 185 IPR035897 -
Seca4g11339 1132 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11339 Seca-Chr4 251980456 251985583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11339 8 836 WRKY Transcription Factor Family AT4G12020 32.670 8.26e-112 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11339 - - gmx:100815486 1714.12