Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11336 ATGGGTTTCCCGGTGGGTTACGCGGAAGTGTTCTTCCCCAACCTCTTCCTTCACACCTTAGCCCTCCTCGGCCTCCTCCGAAACCTCGTCTTCCTCCTCTTCCAATTCATCGGTCTCACTGACTTCCTCGAAACAGAGGTTGCCTGGGCCGACGCCACCGGTACCGCCGCCCGAACCCCCGACGCTGCCAGAACACCCTCCGAGTCGGCGCTTCTGATCCGGGAGCTGCTTCCGGTGGCCAAGTACGGCGACATCGCCGGCGGTGAGGAGAGTGAAGGAAGCAACTGCGCGGTGTGCCTGTTCGAGTTCTCCGAGGAGGAAGAGATCCGGTGCTTGAGGAACTGCAAGCACATTTTCCACCGGGGCTGTGTGGACCGTTGGATCGATCATGATCAGAAAACGTGTCCTCTTTGTAGGACCCCTTTTGTCCCTGATGATATGCTTGATGATTACAATCAACGACTCTGGGCTGCTTCTGGTGTTACTGAGTTTTACGGAGAAGACTACACTGCTTCCTTCTAA 522 0.5651 MGFPVGYAEVFFPNLFLHTLALLGLLRNLVFLLFQFIGLTDFLETEVAWADATGTAARTPDAARTPSESALLIRELLPVAKYGDIAGGEESEGSNCAVCLFEFSEEEEIRCLRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVTEFYGEDYTASF. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11336 173 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Seca4g11336 173 Pfam Ring finger domain 95 139 IPR001841 -
Seca4g11336 173 SUPERFAMILY RING/U-box 90 146 - -
Seca4g11336 173 SMART ring_2 96 138 IPR001841 -
Seca4g11336 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 146 IPR013083 -
Seca4g11336 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 25 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11336 Seca-Chr4 251934342 251934863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11336 1 172 C3H Transcription Factor Family AT1G63840 46.023 4.66e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11336 K16281 - gmx:100500261 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11336 4 251934342 251934863 Seca4g11336 4 251934342 251934863 ECH
Seca4g11336 4 251934342 251934863 Seca2g00953 2 15368471 15368992 PCT