Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11328 ATGACAACCCCTTATGTCCGCCGCCGGAACCCCAGCTCCGACCGCCGGAGCACGCCGGACCGGACCATGCGCTCTCCTGCCTACGCCTCCTCCGAGCTCAGCACCCCCCACCACTCAACCTCCTCCTCCTCCGGCGGCCGGAACCCGTTGTCCGCCGTCGCCAGGTCCTTTGCCGGAATTTTCACCGCTTGCATCACGCCGCCGGAGCCCAACAGCTCCAAGAGCTTCGTGGATTCCGAGGAGTTCAAGTCTTCGTCCGTTGTATCAAATGCTTCAAGAGCTGGTAGTCAGAGAGCACGAGGCTCAAATCGAGGTATCAGCATCAGTTTACACAACTCAATTCAGGGGAAAGAGCCTGGAATTGTAAAGTACAATATGGAGGAAATCATCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGGGCAGTCTACAAGGCCAAACTATTGGATGGAACAATTGTTGCAGTAAAGCGTGCTAAGAAGAGTATACATGAGAAACATTTGGGCATGGAGTTCCAAAGCGAGGTTCAAACACTATCACGGATTGAACATTTGAACTTGGTTAAGTTCTATGGATATTTGGAGCAAGGGGATGAAAGAATTATTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAACATTTAGATTGTATTCATGGAAATGTTCTGGACATGGCTTCTCGTCTAGACATTGCAATTGATGTGGCTCATGCTGTCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAGTCTTCCAACATTCTCCTCACTGAAAACTTTAGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCCCCTGATAGTGACTCTGGCATGACCCATGTTTCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGACCCTGAATACTTGAAAACTTATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGTGTTTTGCTTGTTGAAATAATCACAGGCAGACGTCCCATTGAACCAAAATTTGAACTCAAGGAGAGAATAACAGCAAAATGGGCTATGAAGAGGTTTATTGAGGGAGATACTATCTCAGTCTTGGACCCAAGATTGGATCAGACAGCTGCAAACACTTTGGCCCTGGAAAAGATACTTGAGCTAGCATTACAGTGCTTGGCTCCTCGTAGACAAAACAGGCCTAATATGAAGAGATGTGCTGAGATTCTTTGGGCCATCCGCAAGGATTATAGAGAGCTATCAGCTTCAAACTTTCGCTCATTGTCCACTACCCATAGGAGCACCTCAATGAGAGAGTGA 1323 0.4626 MTTPYVRRRNPSSDRRSTPDRTMRSPAYASSELSTPHHSTSSSSGGRNPLSAVARSFAGIFTACITPPEPNSSKSFVDSEEFKSSSVVSNASRAGSQRARGSNRGISISLHNSIQGKEPGIVKYNMEEIIQVTRNFSPSFKIGQGGFGAVYKAKLLDGTIVAVKRAKKSIHEKHLGMEFQSEVQTLSRIEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIHGNVLDMASRLDIAIDVAHAVTYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVEIITGRRPIEPKFELKERITAKWAMKRFIEGDTISVLDPRLDQTAANTLALEKILELALQCLAPRRQNRPNMKRCAEILWAIRKDYRELSASNFRSLSTTHRSTSMRE. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11328 440 CDD STKc_IRAK 142 411 - -
Seca4g11328 440 PANTHER OS01G0750732 PROTEIN 47 422 - -
Seca4g11328 440 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 96 213 - -
Seca4g11328 440 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Seca4g11328 440 MobiDBLite consensus disorder prediction 1 48 - -
Seca4g11328 440 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Seca4g11328 440 Gene3D Transferase(Phosphotransferase) domain 1 214 434 - -
Seca4g11328 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca4g11328 440 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 214 425 - -
Seca4g11328 440 MobiDBLite consensus disorder prediction 23 48 - -
Seca4g11328 440 Gene3D Phosphorylase Kinase; domain 1 99 213 - -
Seca4g11328 440 SMART serkin_6 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11328 440 Pfam Protein kinase domain 141 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11328 440 ProSiteProfiles Protein kinase domain profile. 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11328 Seca-Chr4 251834795 251838213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11328 11 406 Trihelix Transcription Factor Family AT1G68690 37.081 8.25e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca4g11328 PK_Tyr_Ser-Thr 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11328 - - gmx:100792034 700.664