Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11322 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCACCTGCAAGGAACACCAGTGTATTACTATTACCCGCCGACTTTAGAAGAGCGTGAGTCTTTAACCTCTAATGATGGTGCGGTTACTTCACTCACTGCGGGATTACTGGTAGGCTTGAACCTGGAAGCATCCACACCTGATACTTACCAGCCCCCTCCTACACCTCTGCCTTATGATACGGTCCTGGGAGGTCCAGCATCAACAGACTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACTTTAATTACATGTGAAGATCTTGAAGAATCTGATTGTAAAGCTCAAGCTAAATCTGCACCTATATCTCCAAGGAAGGAAGAGTTGTCAAAATCAAATGAATCTCATGCATCAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGTATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTGACCAAGCACTGGACTAG 576 0.434 MGGCCCSARKPHLQGTPVYYYYPPTLEERESLTSNDGAVTSLTAGLLVGLNLEASTPDTYQPPPTPLPYDTVLGGPASTDSESGRETVSGSSFETLITCEDLEESDCKAQAKSAPISPRKEELSKSNESHASVTEEEDVCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQALD. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11322 191 Pfam Ring finger domain 139 180 IPR001841 -
Seca4g11322 191 MobiDBLite consensus disorder prediction 118 132 - -
Seca4g11322 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Seca4g11322 191 CDD RING-H2_AIRP1-like 136 184 - -
Seca4g11322 191 SMART ring_2 140 180 IPR001841 -
Seca4g11322 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Seca4g11322 191 SUPERFAMILY RING/U-box 134 187 - -
Seca4g11322 191 MobiDBLite consensus disorder prediction 109 132 - -
Seca4g11322 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Seca4g11322 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11322 Seca-Chr4 251768748 251773433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11322 1 191 C3H Transcription Factor Family AT4G00335 59.686 1.43e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11322 - - gmx:100792561 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11322 4 251768748 251773433 Seca4g11322 4 251768748 251773433 ECH
Seca4g11322 4 251768748 251773433 Seca2g00956 2 15433372 15436905 PCT