Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11321 ATGTCACTCCTTTTCCTTCTCTTTCTTCTTCTCTCTTCCTTCACTCTTACCCTTTCTTCTTCTTCTTCCACCACCATTCTTCTAACACCAAACTCCACCATTCTCAGCGATAACCGAACCTTCGAGCTTGGCTTCTTCAACATAGAAGACCAACCTCGCTGGTACCTCGCTATCCGCTTCACTTCCCTCCCATCCCCCAACATCATATGGCTCGCCAACCCGCTCAACCCTCTCACCAACCTCTCCGCTTCATCTCTCCAACTCACCCAAACTGGTCAATTACTCCTCACCCAATCCGGTTCAATCCTCTGGCGAACCAACAACATACAGGGTCAGGGTCAAGGCGTGAACTTGAACCTTCTAGAAAACGGAAACCTCGTTCTCCTCTCCCGAAACAGTGCCGTTTCTTGGCAGAGCTTCGATGAACCCACCGACACGTGGCTCCCTGGCATGAACCTCACCCGCTTCCGTTCCCTTCTCTCCTGGCGCACTCCAACGGACCCTTCTCCTGGGTTTTATTCCCTGCGGTTGAAACCACCGGCGTACGGTGAGTTCGAGTTAGTCTTTAACGGCACCGTTTCGTACTGGTCTACCGGGAACTGGTCTAACGGGTCGTTCGTCAACGTGCCGGAGATGACTATTCCCTACATTTACCGGTTCGATTTTGAGGACCCTTTTACCCCAACGGCGTCGTTTGGGTTCTCGGAGAGACCCATGGAGAATGGTTTCAGGCCTCCTACTATGTTCCGTGTGGAGCCGTTCGGACAGGTTCGGCAGTACACGTGGTCGACGCAGGCTGGTTCGTGGAACATGTTTTGGTTCAGACCTGATGGTGTTTGTCAGGTTCGTGGACTTTGCGGGAGCTTCGGAGTCTGCACCGGTGAAATGTCGAGGCTCTGTGAGTGTGTGAGTGGTTTCGTGCCTGTGGATGGGAATGGGTGGGGTTCTGGTGATTACTCTCAAGGTTGTAAACGTAGTGAGAGCGCGTGTGAGGAGAGTGATGGTTTTGAAGATCTGGGTGCTGTGAGGTTTGCTGATGCCAATGTGAGTTCGTTTAGAGCTAAATCTAGAAGCTTCTGTGAGCGTGATTGTTTGCGTTCTTGTGGTTGTGTTGGTTTGTCTTTCGATGAAGGGAGTGGTATGTGTAGGAATTTTTATGGGTCTGTTTTGGATTTTCAAAATTTAACTGCTTTGGATGGTGGGGGGTTGTATGTTAGGGTTCCCAGAAGGGGATCTGGGAGGAATGGGTTTAATCATAAGGCTCTGAGTGCTGCTATTGTTGGGTCGGTTGCGGTTTTGGGTGTGGCGGTGGTTACGTTGTTGGTGTTGGTAAAGAGGATGAAGGTGAAGAAGAGAAATAAAGGGTTGGAGGATGATGGGTTTGTTCCTGTGTTGAATTTGAAGGTGTTTTCTTATAAGGAGCTTCAATTGGCTACTAGGGGGTTTTCAGAGAAGGTTGGGCATGGTGGGTTTGGGACGGTGTTTCAAGGGGAGTTGAGTGATTCTTCTCTTGTTGCTGTGAAGCGTTTGGAGAGGCCAGGGGGTGGGGAGAAAGAGTTCAGGGCAGAGGTGTCCACAATTGGGAACATTCAGCATGTTAATCTTGTGAGGCTAAGAGGGTTTTGTTCTGAGAATTCTCATAGGCTTTTGGTTTATGAGTACATGCAAAATGGTGCCCTTAGTACTTATCTGCGCAAGGAGGGGCCTTGTTTGAGTTGGGATGTTAGGTTCAGGTTAGCAATTGGAACGGCTAAAGGCATAGCATATTTACATGAGGAATGTAGATGTTGTATTATACACTGTGATATCAAACCTGAGAACATCCTTTTGGATAGTGATTTCACTGCTAAAGTTTCTGATTTTGGATTGGCAAAGCTTATTGGCAGGGACTGCAGCAGGGTGTTGGCGACCATGAGGGGTACATGGGGTTATGTAGCTCCAGAGTGGATTTCTGGTGTGGCAATTACCACCAAAGCTGATGTTTACAGCTATGGAATGACATTGCTAGAGCTAATCGGTGGTCGCCGGAATGTGGAGGCACCGCCATCAGCTGGTGGTAGGGAAAGTGGTGGTGAGACAGGAGAGAAGTGGTTCTTTCCTCCATGGGCTGCACAGCAGATAATTGAGGGTAATTTGATTGCTGTGGTGGATAAGAGGCTTGGAAATGTATATAACATTGAGGAGGCTAAGAGGGTTGCTTTGGTGGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTTCCATGGGTACGGTAGTGAAAATGTTAGAGGGGTTAGTGGAGGTGACTGTTCCTCCACCTCCTAAGTTGCTACAAGCATTGGTTACTGGTGAGTCCTTTCATGGGGTCAAAGCTGATTCTGGCAATGGTGTATCCACTGGTGGCAGCTTATCTGGTGGCAACTTGAAACTGTCAACTGCAGATTCAGAATCATGTATAGGGGATGTTTTTTCCCCAATGGATGTCAATGTCAATGTTCGATAA 2487 0.4861 MSLLFLLFLLLSSFTLTLSSSSSTTILLTPNSTILSDNRTFELGFFNIEDQPRWYLAIRFTSLPSPNIIWLANPLNPLTNLSASSLQLTQTGQLLLTQSGSILWRTNNIQGQGQGVNLNLLENGNLVLLSRNSAVSWQSFDEPTDTWLPGMNLTRFRSLLSWRTPTDPSPGFYSLRLKPPAYGEFELVFNGTVSYWSTGNWSNGSFVNVPEMTIPYIYRFDFEDPFTPTASFGFSERPMENGFRPPTMFRVEPFGQVRQYTWSTQAGSWNMFWFRPDGVCQVRGLCGSFGVCTGEMSRLCECVSGFVPVDGNGWGSGDYSQGCKRSESACEESDGFEDLGAVRFADANVSSFRAKSRSFCERDCLRSCGCVGLSFDEGSGMCRNFYGSVLDFQNLTALDGGGLYVRVPRRGSGRNGFNHKALSAAIVGSVAVLGVAVVTLLVLVKRMKVKKRNKGLEDDGFVPVLNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSSLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSTYLRKEGPCLSWDVRFRLAIGTAKGIAYLHEECRCCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDCSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGGRESGGETGEKWFFPPWAAQQIIEGNLIAVVDKRLGNVYNIEEAKRVALVAVWCIQDDEAMRPSMGTVVKMLEGLVEVTVPPPPKLLQALVTGESFHGVKADSGNGVSTGGSLSGGNLKLSTADSESCIGDVFSPMDVNVNVR. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11321 828 ProSiteProfiles Bulb-type lectin domain profile. 19 141 IPR001480 -
Seca4g11321 828 ProSiteProfiles PAN/Apple domain profile. 330 408 IPR003609 -
Seca4g11321 828 FunFam Receptor-like protein kinase 4 442 554 - -
Seca4g11321 828 SMART serkin_6 480 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11321 828 Gene3D Phosphorylase Kinase; domain 1 442 554 - -
Seca4g11321 828 Pfam Protein kinase domain 483 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11321 828 PANTHER OS07G0415500 PROTEIN 2 770 - -
Seca4g11321 828 SMART blect_4 25 143 IPR001480 -
Seca4g11321 828 FunFam S-receptor-like kinase 5 555 766 - -
Seca4g11321 828 Gene3D - 16 140 IPR036426 -
Seca4g11321 828 Gene3D Transferase(Phosphotransferase) domain 1 555 765 - -
Seca4g11321 828 CDD STKc_IRAK 486 760 - -
Seca4g11321 828 SUPERFAMILY Protein kinase-like (PK-like) 464 758 IPR011009 -
Seca4g11321 828 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Seca4g11321 828 PIRSF SRK 1 810 IPR024171 GO:0004674
Seca4g11321 828 ProSiteProfiles Protein kinase domain profile. 480 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11321 828 Pfam D-mannose binding lectin 68 155 IPR001480 -
Seca4g11321 828 Pfam S-locus glycoprotein domain 196 308 IPR000858 GO:0048544
Seca4g11321 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Seca4g11321 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 53 201 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11321 Seca-Chr4 251757789 251760275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11321 470 767 Receptor kinase-like Gene Family AT5G20050 46.945 3.78e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g11321 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11321 - - lja:Lj0g3v0252549.1 1278.85