Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11320 ATGGCAGGGTGGTCGCTGCTCGACGTAGGAGTTAGCAGTGTCGTTGTTGGAGTGCAATACGACGAGGTTCGGTGCCGTTTTGAGGTGTTTCTTGCTGAGTTCTTGAGGGAGATCTGTCCCACGAGTCGGAGTTGCTTCCGTCCTTTTCCTCCAATGCTGGGTGATGGGCAGCGCGTGGATTTGTTCAAGCTGTTTACGGTGGTGAAGGGGAAAGGAGGGTACGACGCCGTTTGCAATGGAAAGTTGTGGGATTTGGTTGGGGAGGAATCTGGGTTGGGTGTGAGTGTCGGTTCGTCTGTGAAACTGGTTTATAGTAAATACTTGAGTGTTTTAGATGCATGGGTGAAGAAAGTTGCTGATAGTAAGGTACCTTTTGAGTGTGGTTTGGTGGATGATAGGGTTAAGTTCGCTAGGCGTTTGATGGAGTTGCAGGCTGAGGTGAAAGGGTTGTTGTCTGATCGTGCTGCTGATGCTGTGGCTGAGAAGGAGTTAAAGGGTGAATCTGATGATGACTACCGGGGTGTGAGGAAGTTGTGTGGTACTAATGAGGTGAAAGGTTTGAATTTGGAGTCCAATGGAGACCAAAAAGTCCAGAATGGAGGATGTTCTGATTCGGATATGCCAGACCGTGAGATGATGAATGAATCTGTTCTAGGAAACTTGTGTGAGGGTAATGATGCAATGGGAGTAATGGAAGAGTTTGATGGAGGGAAAATTTCTGCGGAGGAGTCCGTGGTGGTGGATGTATCTGATGCAATGAACAGCAGCAGAAGCACAACTGGATTGTCGATTGAAGGCAAGAATGGTGGTGATGATAATACCGGTGTCTTGGTATTGGATTCTTCTGGTGGTGATGGAGGGAGTTCTGGTTATAAGAGGAAGAGAGAGTCTGTGTTTGATTTGCTGAGTTGGGTTACTCGCGTTGCGAAGAATCCTTGTGATCCTGCAGTTGGTTCCATGCCTGAAAAGTCCAAGTGGAAGTCTTACAGTAATCAAGAGCTCTGGAAGCAGGTTTTGCTGTTTCGTGAAGCTGTTTTTTTCAAAAAACATTTTGAGTCGAGCAGTGAACAGCATAATTGGCAGAGTCAGAAGATGCATCCTTGCATGTATGATGATCCCATTGTGACAACCTACAATCTTCGAGAGAGGTTGAAATGTGACAAGAAACTGTTATTTGGAAAATTGACATCAGCTGTACGGAGCTCTTCAGAATCATCTGTAGGAACGGAAGGAGATTCAGACAGAACACCAAGTCCTCATGCTGCAGATCGAGGTGAGAAACAGTCGCTTGATTCCTCCAATTCACATTCAGGTGTTGATAGATGTGGGACCATACGTATCCCTGTGGGGCCAAATAATCAAGCTGTTGTACCACAGTGGACTGGCATGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACCCAAATATGGCCACCGCAAAATGTAACTTCTAGACTCCTTATTGAAAGGGATCCCATAGGAAAGGGAAGACAAGATGTATGTGGCTGCTCACAGCCAGGTTCTGTTGAGTGTGTCAGATTCCACATTGCTGAGAAAAGGGGTAAAGTTAAGTTGGAATTAGGTGTGGCTTATTACCAATGGAATTTTGATAAGATAGGTGAAGATGTCAGGCGTTTTTGGACAAATGAAGATGAGAAAAAATTCAAGGATGTGATACAATCAAACTCTTCCTCATCTGAGACATATTTCTGGGATCATATTTTTAGAACATTTCCTAAGAAGAGCCGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCAACGGAGAGGGTACCAGAATAGGCATACTCCTGATGAAATTGACAGTGATGATGATGAATCAGAATCTGGTTTGAGGAATGTTTTTGGACATCAGACACAGAAATCACGTAGCTCCATCTTATTAACCCCCAAAAAGCCACAGACAAAGGGAAGAGATAGCAAGTGA 1956 0.4468 MAGWSLLDVGVSSVVVGVQYDEVRCRFEVFLAEFLREICPTSRSCFRPFPPMLGDGQRVDLFKLFTVVKGKGGYDAVCNGKLWDLVGEESGLGVSVGSSVKLVYSKYLSVLDAWVKKVADSKVPFECGLVDDRVKFARRLMELQAEVKGLLSDRAADAVAEKELKGESDDDYRGVRKLCGTNEVKGLNLESNGDQKVQNGGCSDSDMPDREMMNESVLGNLCEGNDAMGVMEEFDGGKISAEESVVVDVSDAMNSSRSTTGLSIEGKNGGDDNTGVLVLDSSGGDGGSSGYKRKRESVFDLLSWVTRVAKNPCDPAVGSMPEKSKWKSYSNQELWKQVLLFREAVFFKKHFESSSEQHNWQSQKMHPCMYDDPIVTTYNLRERLKCDKKLLFGKLTSAVRSSSESSVGTEGDSDRTPSPHAADRGEKQSLDSSNSHSGVDRCGTIRIPVGPNNQAVVPQWTGMTSESDSKWLGTQIWPPQNVTSRLLIERDPIGKGRQDVCGCSQPGSVECVRFHIAEKRGKVKLELGVAYYQWNFDKIGEDVRRFWTNEDEKKFKDVIQSNSSSSETYFWDHIFRTFPKKSRADLVSYYFNVFLLQRRGYQNRHTPDEIDSDDDESESGLRNVFGHQTQKSRSSILLTPKKPQTKGRDSK. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11320 651 SMART bright_3 22 117 IPR001606 GO:0003677
Seca4g11320 651 MobiDBLite consensus disorder prediction 402 445 - -
Seca4g11320 651 Pfam ARID/BRIGHT DNA binding domain 43 109 IPR001606 GO:0003677
Seca4g11320 651 SUPERFAMILY ARID-like 25 121 IPR036431 GO:0003677
Seca4g11320 651 MobiDBLite consensus disorder prediction 416 430 - -
Seca4g11320 651 ProSiteProfiles ARID domain profile. 21 116 IPR001606 GO:0003677
Seca4g11320 651 SMART ELM2_2 447 498 IPR000949 -
Seca4g11320 651 CDD ARID 26 108 - -
Seca4g11320 651 MobiDBLite consensus disorder prediction 622 641 - -
Seca4g11320 651 Gene3D - 17 124 IPR036431 GO:0003677
Seca4g11320 651 SMART ARID_2 18 112 - -
Seca4g11320 651 MobiDBLite consensus disorder prediction 605 651 - -
Seca4g11320 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 22 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11320 Seca-Chr4 251737537 251742420 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca4g11320 ARID 5.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11320 - - gmx:100779445 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11320 4 251737537 251742420 Seca4g11320 4 251737537 251742420 ECH
Seca4g11320 4 251737537 251742420 Seca2g00959 2 15520467 15526749 PCT