Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11318 ATGCAATCTGGTGGCGGCGGGCCCGGCCGGAACCCCGGAGTGGGTCCGGCAGGGCGGGCGGCGGCATCGTCGGCGGCTGCATCGCCGTCTTCATCATCTTCGGCATCACAGTTAGGGCTGGAACAACAGCAGCAGCAGCAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAGGGGAATGAAGCTTTTTTATCTTATCAAGCTGGGCGTCAAGGAGTATTTGGGAGCAACAATTTCGCATCCCCTAGTGCCATGCAACTGGCCCAGCAGTCTCGAAAATTCATTGATTTAGCTCAACATGGTCCCAACCAGGATACTCAACTAAGGGGTCAAGGCAGTGAGCAGCAAATGCTAAATCCTGTCCATCAAGCATACCTTCAGTATGCTTTCCAGGCTGCACAACAAAAGCCTGCTTTTGGAATTCAATCACAGCAACAAACTAAAATGGGAATGTTAGGTCCTACGTCTCTGAAGGATCAGGAAATGCGTATGGGAAATTTGAAAATGCAGGACATTATGTCTATGCAGGCAGTTAGTCAAGGTCAAGGATCATCCTCTAGGAATTCGTCTGAAAACATTGCTTGTGGGGAAAAGCAGATGGAGCAAGGACAGCAGATAGCACCTGATCAGAGGAGTGAAGGAAGACCTTCAACCCCAGGACCAGCCATGGGACACTTAATGCCTGGAAATATGATAAGACCCATGCAAGCACCAGAACCTCAGCAGGGCATCCAAAATGTTGTGAACACCCAGGTTGCAGTAGCTGCTCAATTGCAGGCCATGCAGGCATGGGCACGTGAAAATAATTTTGATTTATCAAATCCTGCACATAAACAGTTAATGTTACAGATCATTCCAATGATGCAATCAAGGATGGTCTCACAACTTAAGGTCAATGAGAACAATGTTGGTTCACAGTCATCGCCTGTCCCTGTTTCAAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCAGCACATGCTAACTCATCAAGTGATGCGTCTGGCCAGTCAGGTTCTTCAAAAGCCAGACAGACAGCACCACCCAGCCATCTTGGCCCAACAAATGCCGGTAACTCCAGCGACAAGGCAATGCATCAGTTCAATGTTCATGGCAGAGAGTCTCAAGCTCCTCTGAGGCAACCAGTTATAGTTGGAAATGGAATGCCCTTTATGCATTCTCAACAGTCTTCTAACAACATGAACTTAGGTGCAGACCATCCTTCGAATGCGAAAACTTCATCATCTGGTCCAGAACCTCCTCAAATGCAATATGTTAAACAGTTAAACCAATCTACTCCTCAGGCTGGAGGTCCAACAAATGAAGGCGATTCAGGAAATTATGCCAAATCTCAAGGGGCACCAGCTCAGATGCCTGAGCAACGAACTGGATTTACCAAACAACAACTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGTTGAAGAAAGGAGAAGGTAGTCTTCCTCAAGAACTTCTTCGGGCTATTGTTCCACCAACTCTTGAGATGCAGATACAACACCCAAATCATCCTGCAGGAGGTCAAAACCAAGACAAAACTGCTGGATTGGTAGAACAACCACGGCATATTGAGTCTAATGCCAAGGAGTCACAGTCTATCCTTGCTGTTAATGGACACAGTTCTTTAAAGCAGGAATCCTTTGCCAGAGATGAGAAGTCCACTCTACCATCAGTTCATATGCAAGTTGTTATGCCCTCTGTGTCAAAGGAATCTGCTTCAACATTATCTGCTGGAAAGGAAGAGCAGAAATCAATTGTATGCTCTTTTAAGTCAAACAAGGACGGTGAGCATGGAAACCACAGTACTCCTGTTAGAAGCGAATTAGCATTAGATAGGGGAAAGGCTATTGCACCACAGGCCTCTATATCTGATACAGTGCAAATTACAAAACCTGCACAAGCAAGCACTGTTTCCCAGCCAAAGGATGCAGGATCGACCAGAAAATATCATGGACCCCTATTTGATTTTCCTTTCTTCACTAGGAAACATGATTCCTTTGGGTCATCAATGATGGTAAACAACAATAATAATCTGTCATTGGCATATGATGTCAAAGATATTCTTTTTGAGGAAGGCATGGAAGTAATTAACAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTACTGGCAGTGAACTTAGAGAGGAAACGAATTAGACCAGATCTTGTGTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGTCTTTTAGATCTTCAGTCACGTTTAAGGGATGCGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAATTTGTTAGGTTGTGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCTGTAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGGAAGAAGCTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGAACTGCCCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGCTGCGGGAGTTCTCAAAACGTAAAGATGACGACAGAAACAAAAGAATGGAAGCCTTAAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCCCGGGTGATGCTGCAGAAAGATATGCTGTTCTTTCATCTTTCTTAACCCAGACAGAAGAGTATCTACATAAATTAGGAAGTAAGATAACAGCTGCCAAAAATCAACAGGAGGTGGAGGAGGCAGCAAAAGCTGCGGCATCTGCTGCACGACTGCAGGCAAGCTTCATTAACCCCCACCTTGAATGTTCCAATGGTCTTTCTGAAGAAGAAGTCAGAGTGGCTGCTGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTCTGGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAACCTTGCTCATGCTGTGAATGAAATGGTCATAAGGCAACCGTCACTGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCTTACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGCTTTATAATTGGTTACCATCTGTGGCATGCATTTTTTATGTTGGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTTGTGCCATGAAATTTAATATCCTTGTGACTACTTATGAGTTCATCATGTATGACCGATCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATCGATGAAGCACAGAGAATGAAGGATAGAGATTCTGTTTTAGCACGTGATCTTGATAGGTACCGTTGTCAAAGACGCCTGCTTTTGACAGGAACGCCGTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTAATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTTGAGACGGAGAAGAAAGTTATCATAATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGGGTTGAAGATGTTGAAGGCTCGCTACCACCAAAGGTCTCCATAGTTTTAAGATGTAAAATGTCACCTGTCCAGAGTGCCATTTATGACTGGGTCAAAGCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGTAGGGTTCAAAAGAATCCATCATACCAGGTGAAGCAATATAAAACCCTAAACAACAGGTGCATGGAGTTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAATGACTTGTCTAAAGATTTCATTGTTAAGTCTTGTGGAAAATTGTGGATCCTGGATAGGATACTCATAAAACTTCAAAGAACTGGACATCGGGTTCTCCTGTTCAGTACCATGACAAAACTTCTAGACATCTTGGAAGAGTACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATAGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTCAGTATTCGAGCAGCTGGAAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAAGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCAGTTGTTGACAAAATCTCTAGTCATCAGAAGGAAGATGAACGGAGAAGTGGAGGCACTGTTGACATGGAGGATGAACTTGCAGGTAAGGATCGCTACATCGGATCCATCGAGAGCCTCATAAGGAACAATATTCAGCAATATAAGATAGATATGGCTGATGAAGTCATCAATGCTGGACGATTCGATCAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCACTGCAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAAGTTGAACTGTTTGATCAAATGGACGATGAACTGGATTGGATTGAGGAGATGACACGCTATGATCATGTGCCTAAGTGGCTTCGTGCTAATACAAGAGAAGTAAATGCTGCTATTGCTGCTTTATCAAAAAGACCATCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAAGTTGGTTCTGAAAGAAGAAGAGGACGACCCAAGGGAAAGAAGCATCTTAGTTATAAAGAGTTGGATGATGAAAATTTGGAATACTCTGAAGCAAGCTCTGAGGATAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGGGGCTGATGGAACTCAGCCCATTGATAGAGATCAAATGGAAGATGGTCTGCTTTGTGATGGCGGATATGAATTTCCTCGATCTTTAGAAAATCCTAGAAATAATCAGGTGGTTGAAGAAGCTGGAACCTCTGGGTCATCCTCAGACAGTCAAAGATTGACACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTGGATGCCCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGTTGATTCTCATATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGAGGAACAAGTTTTACAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATACCACTGAAAGGCCTGAAGAAAAGTGTGGCAGTGAAATGGCACCTCATTTGGCAGTCAACTTAGACCATAAATATCAAGCACAACTGAGGACTGACCTAGAATCTAAATCATTTGGAGATTCCAATACGAGCAGGAATGATCAGAACACATCATCATCAAAACATAAGCGAACTTTACCTTCAAGGAGAGTTGCTAATACATCCAAATTACATGGCTCACCAAAGTCTACTCGTTTGAATTGCATATCTGCTCCTTCAGAGGATGGTGGTGAACATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCTTCTGGTCACGGCACTAAGATGACTGAAATCATTCAGAGAAGGTGCAAAAATGTAATCAGCAAGCTCCAAAGAAGAATAGACAAGGAAGGCCATCAAATTGTCCCTTTGTTAACGGATTTGTGGAAGAGGATTGAGAATTCTGGGTACAATGGTGGATCTGGGAACAACCTGTTGGATTTACGGAAGATTGATCAGAGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTGAAGAGCGCGATGCATTTTTATGGTTTTTCACATGAGGTACGATCTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCATTTCCTGATACGGACTTCCGAGAAGCAAGAAGTGCACTTTCTTTCTCTGGTCAAATTTCTGCCACTGTAACATCCCCAAGGTCTGCTGGCCAAAGCAAGAGACACAGGCTGATAAACGAGGTTGAAACCGATGCACACCCTTCACAGAGGCCATTGCAACGTGGATCGGCTTCAAGTGGTGAAAACAGCAGGATCAAAGTTCATGTGCCACAGAAGGAATCAAGAACTGGAAGTGGTTGTGGCAGCACCCGGGAGCAACTTCAGCAGGATGATCCTCCACTGCTCACTCATCCAGGTGAACTTGTTGTATGCAAGAAAAGAAGAAATGACAGGGAAAAATCATTAGTGAAGCCCAGGACTGGCCCTGTTTCGCCAACTAGAATGGGTACCACTATGAGAAGTCCAGGACCATGTTCAGTTCCCAAGGATGCTAGATTAACTCAGCAGTCTCAACAACCAAATGGATCTGGTGGGTCAGTTGGGTGGGCAAATCCTGTAAAGCGGCTAAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6687 0.4337 MQSGGGGPGRNPGVGPAGRAAASSAAASPSSSSSASQLGLEQQQQQQQIGSRQSFQQQLLRKPEGNEAFLSYQAGRQGVFGSNNFASPSAMQLAQQSRKFIDLAQHGPNQDTQLRGQGSEQQMLNPVHQAYLQYAFQAAQQKPAFGIQSQQQTKMGMLGPTSLKDQEMRMGNLKMQDIMSMQAVSQGQGSSSRNSSENIACGEKQMEQGQQIAPDQRSEGRPSTPGPAMGHLMPGNMIRPMQAPEPQQGIQNVVNTQVAVAAQLQAMQAWARENNFDLSNPAHKQLMLQIIPMMQSRMVSQLKVNENNVGSQSSPVPVSKQQVNSPAVASESSAHANSSSDASGQSGSSKARQTAPPSHLGPTNAGNSSDKAMHQFNVHGRESQAPLRQPVIVGNGMPFMHSQQSSNNMNLGADHPSNAKTSSSGPEPPQMQYVKQLNQSTPQAGGPTNEGDSGNYAKSQGAPAQMPEQRTGFTKQQLHVLKAQILAFRRLKKGEGSLPQELLRAIVPPTLEMQIQHPNHPAGGQNQDKTAGLVEQPRHIESNAKESQSILAVNGHSSLKQESFARDEKSTLPSVHMQVVMPSVSKESASTLSAGKEEQKSIVCSFKSNKDGEHGNHSTPVRSELALDRGKAIAPQASISDTVQITKPAQASTVSQPKDAGSTRKYHGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVKDILFEEGMEVINKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQSRLRDAIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAASAARLQASFINPHLECSNGLSEEEVRVAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEMVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVACIFYVGGKDHRSKLFSQEVCAMKFNILVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSPVQSAIYDWVKATGTLRLDPEDEKRRVQKNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDERRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEVELFDQMDDELDWIEEMTRYDHVPKWLRANTREVNAAIAALSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHLSYKELDDENLEYSEASSEDRNGYAHEEGEIGEFEDDGYSGADGTQPIDRDQMEDGLLCDGGYEFPRSLENPRNNQVVEEAGTSGSSSDSQRLTQIVSPSISSQKFGSLSALDARPSSISKRMTDELEEGEIAVSVDSHMDHQQSGSWIHDRDEGEEEQVLQKPKIKRKRSLRVRPRHTTERPEEKCGSEMAPHLAVNLDHKYQAQLRTDLESKSFGDSNTSRNDQNTSSSKHKRTLPSRRVANTSKLHGSPKSTRLNCISAPSEDGGEHSRESWEGKPINSSGSSGHGTKMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGYNGGSGNNLLDLRKIDQRIDRLEYNGATELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARSALSFSGQISATVTSPRSAGQSKRHRLINEVETDAHPSQRPLQRGSASSGENSRIKVHVPQKESRTGSGCGSTREQLQQDDPPLLTHPGELVVCKKRRNDREKSLVKPRTGPVSPTRMGTTMRSPGPCSVPKDARLTQQSQQPNGSGGSVGWANPVKRLRTDSGKRRPSHM. 2229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11318 2228 MobiDBLite consensus disorder prediction 306 371 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 2122 2137 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1 59 - -
Seca4g11318 2228 Gene3D - 1935 2077 IPR036427 GO:0005515
Seca4g11318 2228 SMART QLQ_2 471 508 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11318 2228 MobiDBLite consensus disorder prediction 24 59 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 2190 2206 - -
Seca4g11318 2228 ProSiteProfiles QLQ domain profile. 472 508 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11318 2228 FunFam ATP-dependent helicase BRM 1249 1459 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 183 243 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1645 1674 - -
Seca4g11318 2228 Coils Coil 747 767 - -
Seca4g11318 2228 PANTHER SNF2/RAD54 HELICASE FAMILY 735 1801 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1789 1810 - -
Seca4g11318 2228 Gene3D - 1249 1459 IPR027417 -
Seca4g11318 2228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1239 IPR027417 -
Seca4g11318 2228 SMART ultradead3 1005 1194 IPR014001 -
Seca4g11318 2228 Pfam SNF2-related domain 1012 1316 IPR000330 GO:0005524|GO:0140658
Seca4g11318 2228 SMART bromo_6 1934 2049 IPR001487 GO:0005515
Seca4g11318 2228 CDD SF2_C_SNF 1335 1460 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1857 1936 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 2087 2228 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 2096 2112 - -
Seca4g11318 2228 SUPERFAMILY Bromodomain 1939 2047 IPR036427 GO:0005515
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1616 1718 - -
Seca4g11318 2228 Pfam QLQ 473 506 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11318 2228 MobiDBLite consensus disorder prediction 398 472 - -
Seca4g11318 2228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1581 IPR027417 -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 183 218 - -
Seca4g11318 2228 SMART helicmild6 1366 1450 IPR001650 -
Seca4g11318 2228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1021 1186 IPR014001 -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1886 1906 - -
Seca4g11318 2228 Gene3D - 799 872 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1857 1878 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1784 1836 - -
Seca4g11318 2228 FunFam Brahma1 1936 2059 - -
Seca4g11318 2228 Gene3D - 1000 1248 IPR038718 -
Seca4g11318 2228 FunFam ATP-dependent helicase BRM 1000 1248 - -
Seca4g11318 2228 Pfam Helicase conserved C-terminal domain 1339 1450 IPR001650 -
Seca4g11318 2228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1340 1517 IPR001650 -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 394 472 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 638 665 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 2148 2164 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 638 660 - -
Seca4g11318 2228 MobiDBLite consensus disorder prediction 1922 1936 - -
Seca4g11318 2228 FunFam ATP-dependent helicase BRM 798 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11318 Seca-Chr4 251702135 251714392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11318 1030 1475 RAD5 or RAD16-like Gene Family AT1G02670 26.692 1.60e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g11318 SNF2_N 5.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11318 - - gmx:100807104 3602.76