Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11309 ATGGCAGTGGCGAGTCGTACTCCTATGGTTGCAACTCCACATGGGGTCAGTTGTGTGAACTCTCCTCATGATATTGGGCTTCATAGAATAAGAATGATGACCACTAGTAGGAGGGAAAGTGTACAAGATCAGCCAAATTATATTAATCCAGATGTGATTATTAATGACACAATATATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATTCAGAACTCTCGAGGAAACAGAATATGCATCCTTCATGTTCACGTGCCAGCTGCCATGATTCCTTTGATGGGTGCTAAATTTCCAGCAAGTGCACTGAAAGAGCAGGAAGTTGGAGCATACAGGGAAATTGAAAGGCAAGACATGCATAAGACTCTGGATGCCTATCTTCTTATCTGTCAAAAGATGGGGGTGAGGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTGTAGAACTCATCTCCCATCATAACATACAAAAGCTTGTAATGGGAGCAGCTTCTGATAAGTACCATTCTAGGAGAATGACGGATCTCAGATCTAAGAAAGCCATCTATGTATGTGAACAAGCTCCAGCTTCTTGTCACATACAGTTTATCTGCAAAGGCTACCTCATACACACAAGGGATGGCAATTTGGATAGAAGTAATGTAGAGGGCAAATCTCCTTTGGTGCAGCAAATGCCAAACTCTGAAGTTGGGCATTCCCCTAACTTGAGATCTCAATCTGTGTCATGGGGGCAAAATCAATGGGTGAAACTAGCTAGTCCAGCTCAAGAGCTATTTCGTAGAGCAAGGTCTACCAATGATGGAAATGGAAGGAGCATTGCCTCTGTTTCTTCTTCAGAAGGATCTTCAACTACTACACCACAGAGCAAGTTGGGTTCTGATGAGTCAGATAGGGTGTCAAGATGGACTAATTCACCTTCAGTTTTGTCAATGTGCTCTGATAGTGAATCACCAAATTTGATTAGTGATGGCAGTGAGAATGCATTAGACTTGATCAGTTTGAGTGGCCTTTCTATTATTAAGGAGGAATATTCTCATCATTCATCACCTCCTAGTGTCCTGGATGGAGGAATGGATGATAGTGTGTATGATCAACTTGAACAAGCAATGGCTGAGGCTGAGAATGCAAGAAGGGATGCATTTCAAGAAACTCTTAGGCGTGGCAAAGCTGAAAAAGATGCCATTGATGCTATACGCAGGACTAAAGCCGCTGAAATCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTAGAGGAAGCACTAGTGAAAGCAAAAGAAGAAATTGATAATATGAAGAGCCAAAGAGACAAAGTTAATGAGGAACTCCAACTTGCACTACATCACAAATCATCACTAGAGAATCAAATTGCATCAACTGAACTTTCTATTAAGGAGTTGGAGCAGAAGATTATATCTGCTGTTGATCTATTACAAAGCTCCAAGAATGAACAAGATGACATCCAAATGCAGCGTGATAATGCATTGAAAGAGGCTGAGGAGTTAAGGAGAAAATCACAAGGAGAGTCCTCAAGCACACATGTAGTGCTTCAACTCTTCTCAGAATTCTCTTGTTTAGAGATTAAAGAAGCAACAAGTAACTTCAATCCTTCCCTTAAGATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTACCCTGCGTCACACTGAGGTGGCTATAAAAATGTTGAACCCCAACAGCACACAAGGACCCTCTGAGTTTCAACAGGAGGTAGGAGCCTGCCCAGAATCATGGACTCTTGTGTATGAATATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCCTTGTCATGGCAAACTCGGATTCACATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATTCAAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCTAACATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCTCTAGGATACTATCATGTGAAGAGGATTCAAGTAACAACATTTCACAGTTTTGGATGACTGTTCCAAAGGGAACATTTGTCTACATGGATCCTGAATTCCTTACTTCAGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTATTAAGATTGATAACTGGGAGACCAGCTTTGGGAATAATGAAGGAAGTGCAATATGCATTACAAGGTGGAAAGCTGAAATCTGTGTTGGATCCTTTGGCTGGAGAATGGCCATTTGTGCAAGCTGAACAATTGGCTTGTTTGGCTTTGAGGTGTTGTGATATGAATAGGAAGAGCAGGCCAGACCTTCATTCAGATGAAATTATGCAAGATCCACATGTGGCTGCAGATGGTTTCACCTATGAAGCTGAGGCTATAAGGGGATGGCTGGAAAGTGGTCATGACACTTCACCAAGGACAAATTCTAAGCTTGCACATCTCAATCTTGTTCCCAACCATACTCTTCGCTATGCAATTCAGGACTGGCTTCAAAGTCACTGA 2553 0.4132 MAVASRTPMVATPHGVSCVNSPHDIGLHRIRMMTTSRRESVQDQPNYINPDVIINDTIYVAVAKDVKDSKLNLIWAIQNSRGNRICILHVHVPAAMIPLMGAKFPASALKEQEVGAYREIERQDMHKTLDAYLLICQKMGVRAEKLHIEMDCIEKGIVELISHHNIQKLVMGAASDKYHSRRMTDLRSKKAIYVCEQAPASCHIQFICKGYLIHTRDGNLDRSNVEGKSPLVQQMPNSEVGHSPNLRSQSVSWGQNQWVKLASPAQELFRRARSTNDGNGRSIASVSSSEGSSTTTPQSKLGSDESDRVSRWTNSPSVLSMCSDSESPNLISDGSENALDLISLSGLSIIKEEYSHHSSPPSVLDGGMDDSVYDQLEQAMAEAENARRDAFQETLRRGKAEKDAIDAIRRTKAAEILYKEELKLRKELEEALVKAKEEIDNMKSQRDKVNEELQLALHHKSSLENQIASTELSIKELEQKIISAVDLLQSSKNEQDDIQMQRDNALKEAEELRRKSQGESSSTHVVLQLFSEFSCLEIKEATSNFNPSLKIGEGGYGSIFKGTLRHTEVAIKMLNPNSTQGPSEFQQEVGACPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIHIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRILSCEEDSSNNISQFWMTVPKGTFVYMDPEFLTSGELTPKSDVYSFGIILLRLITGRPALGIMKEVQYALQGGKLKSVLDPLAGEWPFVQAEQLACLALRCCDMNRKSRPDLHSDEIMQDPHVAADGFTYEAEAIRGWLESGHDTSPRTNSKLAHLNLVPNHTLRYAIQDWLQSH. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11309 850 ProSitePatterns Protein kinases ATP-binding region signature. 551 572 IPR017441 GO:0005524
Seca4g11309 850 SMART serkin_6 545 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11309 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 850 IPR013083 -
Seca4g11309 850 PANTHER OS02G0152300 PROTEIN 58 845 - -
Seca4g11309 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Seca4g11309 850 ProSiteProfiles U-box domain profile. 789 850 IPR003613 GO:0004842|GO:0016567
Seca4g11309 850 SUPERFAMILY Protein kinase-like (PK-like) 519 796 IPR011009 -
Seca4g11309 850 Gene3D Transferase(Phosphotransferase) domain 1 603 791 - -
Seca4g11309 850 SUPERFAMILY RING/U-box 791 849 - -
Seca4g11309 850 ProSiteProfiles Protein kinase domain profile. 545 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11309 850 CDD STK_N 57 210 - -
Seca4g11309 850 Coils Coil 373 393 - -
Seca4g11309 850 Pfam U-box domain 789 850 IPR003613 GO:0004842|GO:0016567
Seca4g11309 850 MobiDBLite consensus disorder prediction 272 331 - -
Seca4g11309 850 Pfam Protein kinase domain 593 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11309 850 Gene3D Phosphorylase Kinase; domain 1 515 595 - -
Seca4g11309 850 CDD RING-Ubox_WDSUB1-like 789 836 - -
Seca4g11309 850 Coils Coil 418 515 - -
Seca4g11309 850 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 69 176 - -
Seca4g11309 850 SMART Ubox_2 789 846 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11309 Seca-Chr4 251616205 251624190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11309 53 850 U-box Gene Family AT2G45910 50.294 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g11309 Pkinase 9.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11309 - - gmx:100780079 1126.31