Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11302 ATGGCAAAGAAGTCCCAAAGACGCCCTGTGCGGTATGAGAGAGATAAATCAGGCTGTATGTGGGGTTTTATTAGTATGTTTGATTTTCGCCATGGCCACTCTACTAGGAAGTTGATTGCGGATAAGAGGCGAAGCAGCAAGCATGCAGTTGGTGCTGTACATTCTAAGAACAAGATTGAGATGTTAAGCAATATGGATGAAGTTTGTCAAGGCAGTTTTGACAATGGAGAGAGTAAAAGGTCAACAGTGAGAACTACTGCTAACAAGCCTAGTGTGAAGAAACTCATAGAAGAAGAGATGTTCACTGACCAAAATGCAATGGAAGATACAAATAATGCTGAAGTGGAATCAAAGGATTCCAGATTAAGGCGCGAAGTGCTACAGAAGTTAGACTCCAAGAGGAAAAAGAAATCTTGTGAGAGAAATCGTGATATTACCAATGATTCAAAATTGGATGCAACCTTGAACTCTGAAATCTCACATCATCAGCACTCAAGGAAGCAATCCAAAGATAATCTTGATCTGGATAAGATAATTGAAGAGTTTTGTCATCTCAAAAGTGTTTGTTCCATGATGCAAAACAATGATGGAGAAGCAGAAGTCCATGCAGAATCAAACCAGAAGCATGCTATTTCTGAAGACAATGCAAGAGATGCAATTCGTGAATTTGTGAATCAAATGATATTGAATGGCAAAGATCTGGCAGAAGCTAGAAAATTCCTTAGCTCCCATGAATTAGTGGAAGCACTTCAGCTTTTAAGTTCAGATAAGGAATTGTTTCTTACTTTTCTACAAAACCCAAATTCATTTATATTGAAATGTGTTCAAGAATTTGGGAATTCTCAGGGGGCAAATGACAAAGAACATAGGTATGTTACTGGTTCCAACTTCTCCGAACAAGATCATGACAATCTGGAACAAACTAGGGAGATTGTCAACCACAAAAAGCATAACTTTTTCAGGAAAAAGGTGAAGTCTCAATCAAAAAGTTCAACAAATGAAAATGGGAATACTGACTTTTCAAATAGAATTGTTATTCTGAAGCCTGGTTCTGTGGGCTTCCAAAATTCTGAAACTGGAAACAACCTTGCCTCATCCATAGGTTCTCATGATACTGTCAAATACAATGGTCCTTCTGTTAGAGGTAGTTCACATTTCTCTCTTACAGAGATAAAAAAGAAATTAAAGCATGCTATGGGAAGGGAGAAGCATGGAAACCTTGAAAGGATCTCAAGAAAGCACCCTGCTGAATGTCAAAAAAAGGGGCTTAGCAGCAAATCCTTTGGTAAAGACAATGTTGGAATGAGATCTCCTAATAAAGACCATTTCTTCATTGAAAAAATTGCAAGACCTACCACTGGTGTTATGAAAGGAGACAAGACTGGTAAAAATAAAGAGCCTGAATTGATTGTAGAACATGAAAAGGGTATTTATCCCAAACAAGGGGTTTCTAACTTATATATTGAGGCTAAAAAACATCTCTGTGAGATGGTAGGTAATGGAGATGAGAACATAGACTTGTCAAGTAGGCAGATTTCCAAAACCCTTGGGAGAATACTATCTCTTCCTGAGTATAACTTTTCTCCCCTTGGCAGTCCTGGAAGGGATTGGGAGCATCATTTTGTGACTGCACAGAAAAGGTTTTCCACTTCAGATAAAACTTGGGAGCCTAATAAGGATACTTTGTCTCCTAAGCAAGCAACCTTTGTTGGTCATTTGGATAAGGAAACAGACAGTCCAGAGAAGCAGTCAAGCATTTGTGATGAAAGCTCTAACAATAAAGTACAAGAAATTAAGTCAGAACCTAATTTCTCAGATGACCTTAGTCATGTCAATAGAGTGGAGAACTACTGTCCTGATAGAGATGAGATAGTTACTGAAGGTGATGTAGAATCTGTAAAAGAGATAAATGTTTTGGAATCATCCTCAGAACCAGTTGGCCTCAGTGCAGGAAAGGAAGACCAAAACTATGACATCTCAGAAAATCCTGATAATGCAAGCTGTTCACAATGTTTGAAGGAGGATGTAACAGAAGAAAATCAACCATCATCTCCACTTTCATCCCCCTCTCACTCTTCCATCAATAAGAAAAATAAAGAGATAGAAAGTGTTACAGATGTATCTGGGCGGCCAAGTCCAGTGTCTGTTCTTGATACTCCATTCTCAGAGGATGATGTCAGCCCTGGGTACTCCAGACTTCAACCTGTTGAAGTACCAGTACGGCCACTACATATTCAATTTGAAGAACAGGATTCTTCACCTATAAATCAAATCAATAGAGCAAAATATTGCTTCAAAGAAAGTGAATTGTTATACAACTACATTAAAGCAGTCTTGCAAGCCTCTGGATTGACTAAAGATCAATTGTTGATGAAATGCCTTTCCTCAGACAAGATACTAGATCCTTCCTTGTTTGATCAGGTAGAGTTCTCATCAAACCAGCTTTGCCATGATCAGAAGCTCCTATATGACTGCATCAATGAAGTTCTCATGGAGGTTTGTTGCAATTACTTTGGGGCCTTACCTTGTGTATCATTTGTAAGTCCTAGCATAAGGCTAACTCCAAATATGAAAAGGGTTATTCTCAAGGTCTGGGAAGGAGTGTGCTTTTATTTTCTTCCTTTGCCCCCACCTCACACATTGGACAAAATTATTAGGAAAGACATGGAAAACAGTGGATCATGGATGGACCTTCGATTTGAAGCCGAAACAGTTGGTTTTGAATTAGGTGAAGCCATTCTAGCAGAGCTGATGGAAGATACAATACTCAGCTGTGTAGACAAAAATCCAGAAAGTGAATGTTCTCAGCTTCAATTTGAGGATAAGAACAATAAGAACAACACAAGTGTGTAA 2853 0.3863 MAKKSQRRPVRYERDKSGCMWGFISMFDFRHGHSTRKLIADKRRSSKHAVGAVHSKNKIEMLSNMDEVCQGSFDNGESKRSTVRTTANKPSVKKLIEEEMFTDQNAMEDTNNAEVESKDSRLRREVLQKLDSKRKKKSCERNRDITNDSKLDATLNSEISHHQHSRKQSKDNLDLDKIIEEFCHLKSVCSMMQNNDGEAEVHAESNQKHAISEDNARDAIREFVNQMILNGKDLAEARKFLSSHELVEALQLLSSDKELFLTFLQNPNSFILKCVQEFGNSQGANDKEHRYVTGSNFSEQDHDNLEQTREIVNHKKHNFFRKKVKSQSKSSTNENGNTDFSNRIVILKPGSVGFQNSETGNNLASSIGSHDTVKYNGPSVRGSSHFSLTEIKKKLKHAMGREKHGNLERISRKHPAECQKKGLSSKSFGKDNVGMRSPNKDHFFIEKIARPTTGVMKGDKTGKNKEPELIVEHEKGIYPKQGVSNLYIEAKKHLCEMVGNGDENIDLSSRQISKTLGRILSLPEYNFSPLGSPGRDWEHHFVTAQKRFSTSDKTWEPNKDTLSPKQATFVGHLDKETDSPEKQSSICDESSNNKVQEIKSEPNFSDDLSHVNRVENYCPDRDEIVTEGDVESVKEINVLESSSEPVGLSAGKEDQNYDISENPDNASCSQCLKEDVTEENQPSSPLSSPSHSSINKKNKEIESVTDVSGRPSPVSVLDTPFSEDDVSPGYSRLQPVEVPVRPLHIQFEEQDSSPINQINRAKYCFKESELLYNYIKAVLQASGLTKDQLLMKCLSSDKILDPSLFDQVEFSSNQLCHDQKLLYDCINEVLMEVCCNYFGALPCVSFVSPSIRLTPNMKRVILKVWEGVCFYFLPLPPPHTLDKIIRKDMENSGSWMDLRFEAETVGFELGEAILAELMEDTILSCVDKNPESECSQLQFEDKNNKNNTSV. 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11302 950 MobiDBLite consensus disorder prediction 641 729 - -
Seca4g11302 950 Pfam Protein of unknown function (DUF3741) 225 269 IPR022212 -
Seca4g11302 950 MobiDBLite consensus disorder prediction 569 594 - -
Seca4g11302 950 MobiDBLite consensus disorder prediction 660 694 - -
Seca4g11302 950 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 925 - -
Seca4g11302 950 Pfam Domain of unknown function (DUF4378) 772 920 IPR025486 -
Seca4g11302 950 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11302 Seca-Chr4 251564898 251569269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11302 1 908 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 34.703 1.75e-121 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11302 - - lja:Lj3g3v2330870.1 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11302 4 251564898 251569269 Seca4g11302 4 251564898 251569269 ECH
Seca4g11302 4 251564898 251569269 Seca2g00986 2 15878817 15890278 PCT