Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11292 ATGGGCGCCAATTGCTGTACCCAGAGTGCGTCAATTCAGACGGTGGTGTGTTTTCCTTATCTGGGCGGCGTTATTGAGATTGGCACAACTGAACTGGTCTCTGAGGATCATAATCTCATTCAACATGTCAAGGCATGCTTCTTAGAAATCTCAAAGCCTATATGCTCTGATAAATCTTCCCCTGCCCATAATAAACCACATGATGACAAATATCCAGCATGCACTAAAGGTGACCACGGGGTGTTTGATACAATGGCTTTGGAGAACTCATGTTCCCTTGTAGAAGAAATCAAACTTGATCAATTTCCTGTCAAGGAATTACAAGATGATAACAATGAGCACTGTGACATGGATGGATGCCGTATGGATGAATCCATGTTAGAGGGCATCAATGGTGTGTCTTCTCAAGTTCATTTTGTGAATGATGCATTAATCAATGGTGCCCCAGATTCCCTGAGTTCTTGTGATTGTATGTCTGAAGCTTCTGAGAACCATGGTAAGGATTCTAGCCAAGTTCAACTAAGGGAGCTTCAAGACCACAATCAATCAAAACATAACTCATTGGATATTGGAGCTGATGAAGACTTGTACTACACAAGAACTCTTTGTACTATTCTGGGAAATTCATCAGCTTTTAGACCACATCCAAATGGTGGTAACTCAAATTTCAAATCTAGTTTTGTGAAGTGGAAGAAAGGAGGGATTTCTGAAAGGAAGAGGCCAAGGTTTCCCCAAAGCTTGTTAAAGAAGACTTTGTTTAATGTACCTTTTATGCACACAAGTTACTCCTCTCTCAAGTCACAAAAGGAAAATGAATGGACTAGTAAATTAGAAAATGATGATGATTTCATGCCAAATATATTTGATAATGAAAGAGAAACTAGAAACTTTCAGGTTCGCAGATCTGTGGCTCCTTCTTCCTTAAGTGAGGTGGAGAAGATTTCAATTCTTGGGGACACAATTAAGTACTTGAAAGAGCTTGAGGCTAGAGTGGAAGAACTAGAATCTTACATGGACATTGCAGATTCTGAAGCAAGAACCAGGAGAAAATGCCCTGATGTGCTAGAGCAGATATCAGATAACTATGGTGCCAGAAAGATTTACATGGGAATGAAACCTATTAGGATAAACAAGAGGAAGGGTTGTGATATTGATGGGATGAACACAGAGCTAGACAGAATTGTTTCTGAAGAAGCTAAGAAAATGGATGTGAAAGTCAACATGAAGGAGCAGGAGGTTCTGATTGAGATGAAATGTCCTTACAGGGAAAACATATTGTATGATATCATGAATGCCATAAACAATCTGCATTTAGATGCACACACAGTTGAATCATCAACAATTGATGGTGTTCTCACATTGACACTTAAATCAAAGTTTCGAGGAGCAGCAACTGCACCAATGGGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAACTGCTTGA 1449 0.3975 MGANCCTQSASIQTVVCFPYLGGVIEIGTTELVSEDHNLIQHVKACFLEISKPICSDKSSPAHNKPHDDKYPACTKGDHGVFDTMALENSCSLVEEIKLDQFPVKELQDDNNEHCDMDGCRMDESMLEGINGVSSQVHFVNDALINGAPDSLSSCDCMSEASENHGKDSSQVQLRELQDHNQSKHNSLDIGADEDLYYTRTLCTILGNSSAFRPHPNGGNSNFKSSFVKWKKGGISERKRPRFPQSLLKKTLFNVPFMHTSYSSLKSQKENEWTSKLENDDDFMPNIFDNERETRNFQVRRSVAPSSLSEVEKISILGDTIKYLKELEARVEELESYMDIADSEARTRRKCPDVLEQISDNYGARKIYMGMKPIRINKRKGCDIDGMNTELDRIVSEEAKKMDVKVNMKEQEVLIEMKCPYRENILYDIMNAINNLHLDAHTVESSTIDGVLTLTLKSKFRGAATAPMGMIKEALWKVSGTA. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11292 482 PANTHER TRANSCRIPTION FACTOR TT8 7 479 - -
Seca4g11292 482 Coils Coil 324 344 - -
Seca4g11292 482 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 47 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11292 Seca-Chr4 251437200 251442798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11292 8 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 33.471 1.02e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11292 - - gmx:100783746 684.1