Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11283 ATGGGGATTCAGTGCTCTAGGCTCATCCCATGTTGTGTGAATTCACAAGTTAAGGCATCAGTTCTTGAAACTCCAGATGCTGAAAATGAGGATACAAATGAGGTCAGTAACTGGCCTACATTCCGTGAATTTACACTCGAGCAACTTAAGAATGCAACATCTGGTTTTGCTGTCGAGAATATTGTGTCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAGAGGGAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGAGGTTTAATAGAAATGCTTGGCCTGATTCTCGGCAGTTTTTGGAAGAAGCAAGATCAGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGCTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAGTATATGCCCAATGAAACACTTGCAAAGCACCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGGGTCGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTACCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGATGGTAATCCTAGGCTTTCGAGCTTTGGCCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCGGAAAGCGTAATATATAGCTTTGGTACTCTTTTGCTTGACCTTCTCAGTGGGAAGCATATTCCCCCAAGTCATGCCCTCGATTTGATTCGGGACAGAAATCTTCAGATGCTGACAGATTCTTGTTTGGAAGGACAGTTTTCTGATGATGATGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCTAATCCAAAATCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGTATCCAACATATTGCTACTTTTACTTCATTGTCTCCACTTGGTGAAGCATGCTCAAGAAGGGACTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTTTCTTTTCTGATATTGCAGTTGTCATTCCAGATGTGGACTGATCAAATGCAGGAGACGTTGAATTGTAAGAAAAAGGGAGATGTTGCTTTCCGGCAGAAAGATTTTAGACTAGCAATTGAGTGCTACACACAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTCATTAGTGACATGCCTCAAGAAGCACTGAACGATGCAATGCAAGCACAAGTCATTTCCCCAGTATGGCACATTGCATCTTATCTTCAATCTGTTGCCCTTGCAACAGTTGGCATGGAGAATGAATCCCAAGTAGCTCTTAAAGAGGGCACAACACTGGAATCCAAGAGGAATGCAACTGCTAAACAAAAGTGA 1497 0.4282 MGIQCSRLIPCCVNSQVKASVLETPDAENEDTNEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYRGKLENQMRIAVKRFNRNAWPDSRQFLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIQHIATFTSLSPLGEACSRRDLTAIHEVLENIGYKDDEGVANEFSFLILQLSFQMWTDQMQETLNCKKKGDVAFRQKDFRLAIECYTQFIDAGTMVSPTVYARRSLCYLISDMPQEALNDAMQAQVISPVWHIASYLQSVALATVGMENESQVALKEGTTLESKRNATAKQK. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11283 498 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Seca4g11283 498 FunFam probable serine/threonine-protein kinase At4g35230 387 496 - -
Seca4g11283 498 SUPERFAMILY TPR-like 390 488 IPR011990 GO:0005515
Seca4g11283 498 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Seca4g11283 498 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Seca4g11283 498 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Seca4g11283 498 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11283 498 SUPERFAMILY Protein kinase-like (PK-like) 33 318 IPR011009 -
Seca4g11283 498 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Seca4g11283 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 18 492 IPR045845 GO:0004672|GO:0009742
Seca4g11283 498 Gene3D Tetratricopeptide repeat domain 387 498 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11283 Seca-Chr4 251365606 251371775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11283 10 313 Glycoside Hydrolase AT3G07070 33.133 1.89e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g11283 PK_Tyr_Ser-Thr 3.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11283 K14500 - gmx:100799260 933.324