Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11279 ATGGATCGAGGGGACCAAATGGCATTATCTGGGTCTGCATCTTACTATTTGCAGAGAGGAATACCTGGTTCTGGAAACCAACCTGAATTGCATAATTCACCCAGTAACATCCGTTCACTGTCTAATCCTAATCTTCCATTTCAATCAAGCATTGGGGGTGGTACCATTGGATCCACATTGCCATTAGAATCTTCTGGAATTTCATCTCAATGTATCAATGTTGGTGCTCCTTCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGAGCTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACATTGACACAAGGCCAGAAAAGGGGTAGAGGGCGCCCCCCTGGTTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATAGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACTTCAGGGGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTGCTGATAGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTGATTGCAGCAAGTCTGGTTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAGAACAAGAAAAGGGAAGATTCTGAAGGTGCAGAAGTTGGTATAGAGCCAGATCATCAGGTTGTTCATAATCCAGTTGCAGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGTCCATTGGACATGCGTAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1011 0.4669 MDRGDQMALSGSASYYLQRGIPGSGNQPELHNSPSNIRSLSNPNLPFQSSIGGGTIGSTLPLESSGISSQCINVGAPSGEPVKRKRGRPRKYGPDGAVSLALTPTPATHPGTLTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHVITIAIGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASLVQVIVGSFMWGGSKTKNKKREDSEGAEVGIEPDHQVVHNPVAVNSIPPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11279 336 ProSiteProfiles PPC domain profile profile. 144 286 IPR005175 -
Seca4g11279 336 MobiDBLite consensus disorder prediction 17 52 - -
Seca4g11279 336 MobiDBLite consensus disorder prediction 299 319 - -
Seca4g11279 336 CDD DUF296 149 263 IPR005175 -
Seca4g11279 336 Gene3D - 150 289 - -
Seca4g11279 336 MobiDBLite consensus disorder prediction 71 133 - -
Seca4g11279 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 266 - -
Seca4g11279 336 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Seca4g11279 336 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Seca4g11279 336 MobiDBLite consensus disorder prediction 299 317 - -
Seca4g11279 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Seca4g11279 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 310 IPR039605 GO:0003680
Seca4g11279 336 FunFam AT-hook motif nuclear-localized protein 1-like 150 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11279 Seca-Chr4 251332142 251339656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11279 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.632 1.78e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11279 - - gmx:100799791 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11279 4 251332142 251339656 Seca4g11279 4 251332142 251339656 ECH
Seca4g11279 4 251332142 251339656 Seca2g01015 2 16514585 16519859 PCT