Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11258 ATGAACAACAATAATAGAGCGAGGTACCCTCCCGGGATCGGTCTTGGACGAGGAGGTTTGAACCCTAACCTCAACCCAAACCTGAACCCTCAGTTTCAACCTAGGCCCCCTTACCAACAACAACCACCACCACCACAACAGCAGCACTATGTTCAAAAGCATTTGTTGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAACAGTGGCTGAGAAGGGCGCAGTTGGGTGCTGCCGAATCCAATGTTGATGAGGTTGAGAAGACGGTGCAATCTGAAGCTGTTGACCCGACAGGAAAGAATGTTTTCTTGTATTATCCTCAGTTGTTTCTGGTTTCCTGTGTTAGTTCCCAAGATTGGAAGGCAAGACTAAATATTCCGCCACCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGCGAGCTGCTCATGGGAATATACGAGAAGGGTTTTGAAAAACCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATCATGTTATTCAAGTATTTGTTTTTCTCTACCATTGTCGTGCAGTTGTTATCCTGGTCCCAACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATAATGCGTTTGTATCAACCAGTTCACTTACTAGTAGGAACACCAGGAAGAATATTAGATCTTGCCAAGAAGGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCATTTTCTTCCTGCAAACCGTCAAATCCTGATGTTTTCGGCGACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTATCTTCATAAACCATATGTTATTAACCTTATGGACGAGCTTACTCTGAAGGGTATTACACAATATTATGCTTTCGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAGATCACGGAGCTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTAAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATTTGCACAGGGTATGTTTGATTTCTCCTCACTATCTATCCGTTGGTCGGTCAGGGAGGTTTGGCCACCTTGGTTTGGCAGTAAACTTGATCACTTATGAGGATCGTTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1617 0.4119 MNNNNRARYPPGIGLGRGGLNPNLNPNLNPQFQPRPPYQQQPPPPQQQHYVQKHLLQQQQQQQQQQQQQWLRRAQLGAAESNVDEVEKTVQSEAVDPTGKNVFLYYPQLFLVSCVSSQDWKARLNIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNHVIQVFVFLYHCRAVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPANRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCLISPHYLSVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11258 538 Pfam Helicase conserved C-terminal domain 380 479 IPR001650 -
Seca4g11258 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 535 IPR001650 -
Seca4g11258 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 355 IPR014001 -
Seca4g11258 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 301 309 IPR000629 -
Seca4g11258 538 Pfam DEAD/DEAH box helicase 169 343 IPR011545 GO:0003676|GO:0005524
Seca4g11258 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 518 IPR027417 -
Seca4g11258 538 Gene3D - 125 358 IPR027417 -
Seca4g11258 538 MobiDBLite consensus disorder prediction 29 44 - -
Seca4g11258 538 FunFam ATP-dependent RNA helicase DDX6 125 358 - -
Seca4g11258 538 MobiDBLite consensus disorder prediction 45 60 - -
Seca4g11258 538 FunFam ATP-dependent RNA helicase DDX6 359 538 - -
Seca4g11258 538 Gene3D - 359 538 IPR027417 -
Seca4g11258 538 SMART ultradead3 163 369 IPR014001 -
Seca4g11258 538 SMART helicmild6 405 496 IPR001650 -
Seca4g11258 538 CDD DEADc_DDX6 146 356 - -
Seca4g11258 538 CDD SF2_C_DEAD 366 505 - -
Seca4g11258 538 MobiDBLite consensus disorder prediction 1 60 - -
Seca4g11258 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Seca4g11258 538 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 62 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11258 Seca-Chr4 251103119 251114355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11258 144 535 Eukaryotic Initiation Factors Gene Family AT3G19760 36.294 5.92e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11258 K12614 - egr:104442084 812.372