Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11249 ATGTCATTCACTGGAACTCTTGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTTGATTTATTAACTCTTGAAGGTATTCCTTACCATAAAAACTGCTTCAAATGCAGCCACTGCAAGGGATATCTTACGATGAGTACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAAATGCAAAGTCTTCTGAGAAACAAAATGATCTGAATAAGACCCCAAGTAGGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCACTGGAAAAGGTGACATTGGAAGGGGAGTGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAGCTACAGCCATGTACTCAAAGCTGCTGCACACAAGAGGACTGGTTCTTCTACACCTCCTGAATCAATTGAACTGCCAGCAGCAGCATCTGAGGAACAAGATGAAGACACCTCTTGA 615 0.4293 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQNAKSSEKQNDLNKTPSRLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGSYSHVLKAAAHKRTGSSTPPESIELPAAASEEQDEDTS. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11249 204 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Seca4g11249 204 FunFam LIM domain and actin-binding 1 4 74 - -
Seca4g11249 204 PANTHER OS06G0237300 PROTEIN 6 102 - -
Seca4g11249 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Seca4g11249 204 MobiDBLite consensus disorder prediction 178 204 - -
Seca4g11249 204 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Seca4g11249 204 Pfam LIM domain 10 65 IPR001781 -
Seca4g11249 204 Pfam LIM domain 106 161 IPR001781 -
Seca4g11249 204 SMART lim_4 105 157 IPR001781 -
Seca4g11249 204 SMART lim_4 9 61 IPR001781 -
Seca4g11249 204 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Seca4g11249 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Seca4g11249 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Seca4g11249 204 CDD LIM1_SF3 6 68 - -
Seca4g11249 204 Gene3D Cysteine Rich Protein 102 170 - -
Seca4g11249 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Seca4g11249 204 Gene3D Cysteine Rich Protein 5 72 - -
Seca4g11249 204 FunFam LIM domain and actin-binding 1 100 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11249 Seca-Chr4 251032759 251034634 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Seca4g11249 LIM 1e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11249 - K09377 gmx:100800234 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11249 4 251032759 251034634 Seca4g11249 4 251032759 251034634 ECH
Seca4g11249 4 251032759 251034634 Seca4g11249 4 251032759 251034634 PCT