Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11248 ATGGATATAGCTTTTAGCTTGCCACGGCCAAAAGTGGTATTGGATGGTTTTGATTCTTGCAATGTGTTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTCGGAAACTCGAGGACTATTTTGAAAGCTCGTTTTAGTGGGATGAACAAGATTGGTAGTAGGAGTAATTCAAGAGTGGTTTGTGTAGGAGAGTTTAGAGTTTCAATTGTGAAGAGGAGTTTGTCTTGTAAGAGCAATAACCTTGTTAGGGGAAATAGGGAAATATGCTCAAAGTGTCAGGGTGATGATTCTTTAGCATATGTAAATGGCAATGGCCGGAATGTTGGTAATGTGGAAGGTAAGGATGGGGACTCTGATTTGGGGTCCATTTCCAGTTTTGAATTGAGTGAACCTTTGGGAGGAGGAGGAGAAGAAGGGCTAGGAGGGAAGAAAGAAGTTGAGGGTGAAGTAGAAGTAGATGTACAAAGTGTGGATGAATTGAAAGAATTGTTGCAGAAGGCCTTGAAAGAACTAGAAGATGCTCGAGTAAACAGTGTCATATTTGAGGAAAAGGTTAAAAAGATATCAGAGACTGCAATTTCTTTGCAGGATGAAGCAGCGGGTGCTTGGAATGATGTTAATTCTACCCTTGATATCATCCAAGAAATTGTGAATGAAGAATTTGTTGCCAAAGAAGCTGTTCAAAATGCAACAATGGCTCTTTCTTTAGCTGAGGCAAGGCTCCAAGTAGCCGTTGAGTCTTTGGAGGTTACAAAAGAAGTTTACAATTCCCCGCAAGGTTCTAATGAGAGTAATGGTGATAACGATATAGTGCAAGAGGAGAAAGCACTTGTGGTTGCTCAGGAAGATATTAAGGAATGTCAGGCAAATTTAGAAAACTGTGAGGCAGAGTTGAGGCGCTTACAAAGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAGTTACATGAAATTGCAGAAAAGGCACAGCTGAATGCAGTGAAAGCAGAGGAGGATGTCACAAACATAATGCTTCTAGCGGAGCAAGCTGTTGCCTTTGAACTTGAGGCTGCACAGTGTTTGAATGATGCAGAGATTGCGTTACTAAGAGCAGAAAAGTCTGCCTCTAGTGTTAATGCTGATATCACAGACACTCAACAAGTACAAGATGTTGTGGCTGTTCCTGACGAGGAGAAAGCGGTTCAACATTTTTCTGGTGATGATGCTGTTATAAGAGAGCTTGATTTCTCAAGTGATGATGAGTCTTTGCTTGCCACACGATCACCAGAGTCACCATCTAATGAAACCAGCCAAATTTTGGAAGATATAACACAGTCTGATTATCTTAGTGATCATGAGAATGGACACTTAAACTTAGACTCTTCTAAAGAAGCTGAAATTGATGTAGAGAAGTCAAAGAATGTAGTTCAAACAAAAAAACAGGAAACACAGAAAGATTTGACTAGAGATAATTCACCATTTGCTCCCAAGACGTTATTGAAGAAGTCTTCCCGATTTTTTCCTGCATCATTTTTCTCTTTTACAGCAGATGAGACTGATTATACACCAGCATCAGTTTTCAATGGTCTTGTGGATTCTGCACAGAAGCAGTTACCCAAGCTGGTTGTTGGGTTATTGTTAATTGGAGCAGGGGTTGCCTTCTATGCCAATAGAGCAGAGAGGAGTTCTCAGCTGCTTCAGCAGCCAGAAGTCATTACAACCACTGTTGAAGAAGTTTCCTCAAGTGAAAAGCCTCTGGTTAGACATCTTCAGAACCTCCCCAAGAGAATTAAGAAAATTATTACGTCATTACCTGATCAAGAGGTGAATGATGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATTCCTGGAGGCAGTCCCGTTCTTGGTTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGCCATGTTCACGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTCAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGTTGACTGCTGTAGCAATTGGCTTGGTAGCTCATTATGTTTGTGGCCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCAACTGCTGTTGTCCTGCAGGTGTTACAGGAGAGAGGTGAGAGCACATCACGGCATGGCCGGGCTACATTTTCGGTTTTACTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTCATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGTGGACGATTGCTTCTTCGACCCATATACAAGCAGATTGCAGAAAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCCTACAGGTTGAATCTGATATTGCTCCATATCGCGGCCTTCTATTGGGCCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTATTTCAAACTTTCCAATCATTACAGGGACATTGGGACTCTTGATATGTGGCAAGACTATCTTGGTTTCCCTGATTGGCAGAATTTTTGGTATTTCACTCATTTCTGCCATTAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTGCTGTTTCTTGTTGTGGGAATTTCAATGGCCCTGACGCCATGGCTAGCTGAAGGAGGCCAGCTAATTGCTTCTCGTTTTGAGCTGCATGATGTTCGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATTATTATTTGTGGATTTGGGCGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCTGTTGGGCGTTCCCTGGATCTCCCCGTGTACTTTGGGGATGCTGGTAGTCGAGAGGTCCTACATAAAGTTGGGGCTGAAAGGGCAAGTGCTGCAGCAGTAACTCTAGATTCCCCTGGTGCAAATTATAGAACAGTTTGGGCTCTAAGCAAGCACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATATTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACCGCTGTTGTCCCAGAGACCTTGGAACCAAGCCTTCAACTAGCAGCTGCAGTGCTTGCACAGGTGACTATCATATTGTTATTGGAACAGATATATTGA 3477 0.4248 MDIAFSLPRPKVVLDGFDSCNVFGGRGFGCAFLGNSRTILKARFSGMNKIGSRSNSRVVCVGEFRVSIVKRSLSCKSNNLVRGNREICSKCQGDDSLAYVNGNGRNVGNVEGKDGDSDLGSISSFELSEPLGGGGEEGLGGKKEVEGEVEVDVQSVDELKELLQKALKELEDARVNSVIFEEKVKKISETAISLQDEAAGAWNDVNSTLDIIQEIVNEEFVAKEAVQNATMALSLAEARLQVAVESLEVTKEVYNSPQGSNESNGDNDIVQEEKALVVAQEDIKECQANLENCEAELRRLQSRKEELQNEVNKLHEIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEAAQCLNDAEIALLRAEKSASSVNADITDTQQVQDVVAVPDEEKAVQHFSGDDAVIRELDFSSDDESLLATRSPESPSNETSQILEDITQSDYLSDHENGHLNLDSSKEAEIDVEKSKNVVQTKKQETQKDLTRDNSPFAPKTLLKKSSRFFPASFFSFTADETDYTPASVFNGLVDSAQKQLPKLVVGLLLIGAGVAFYANRAERSSQLLQQPEVITTTVEEVSSSEKPLVRHLQNLPKRIKKIITSLPDQEVNDEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLLTAVAIGLVAHYVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLISNFPIITGTLGLLICGKTILVSLIGRIFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAEGGQLIASRFELHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRSLDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVTIILLLEQIY. 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11248 1158 Pfam Sodium/hydrogen exchanger family 614 984 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca4g11248 1158 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 615 895 IPR004771 GO:0006812|GO:0008324|GO:0016020
Seca4g11248 1158 Gene3D - 604 990 IPR038770 -
Seca4g11248 1158 Coils Coil 153 183 - -
Seca4g11248 1158 Gene3D - 1012 1152 - -
Seca4g11248 1158 ProSiteProfiles RCK N-terminal domain profile. 1016 1138 IPR003148 GO:0006813
Seca4g11248 1158 MobiDBLite consensus disorder prediction 442 479 - -
Seca4g11248 1158 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1013 1147 IPR036291 -
Seca4g11248 1158 FunFam K(+) efflux antiporter 2 chloroplastic 604 990 - -
Seca4g11248 1158 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 191 1149 - -
Seca4g11248 1158 MobiDBLite consensus disorder prediction 442 486 - -
Seca4g11248 1158 FunFam K(+) efflux antiporter 2 chloroplastic 1012 1155 - -
Seca4g11248 1158 Pfam TrkA-N domain 1017 1130 IPR003148 GO:0006813
Seca4g11248 1158 Coils Coil 269 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11248 Seca-Chr4 251013364 251029932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11248 1 1137 Inorganic Solute Cotransporters AT4G00630 66.466 0.0 1366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11248 K03455 - gmx:100791174 1739.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11248 4 251013364 251029932 Seca4g11248 4 251013364 251029932 ECH
Seca4g11248 4 251013364 251029932 Seca2g01037 2 16780698 16798740 PCT