LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11235	ATGAAGTTCTGCTTTTTAAGATTTCTCCGTTTCATTTCCTTTTTTCAGCTGCCTTGTTGTTCCCATCCAATCTCAATATACTCTGTCTCAAATAAAAGAAAGCTGAATGGAGGTGGAAAATCCGTGTCAGAGACAAACGATCCTCCACAAACAAAGTACGATGTTTTTGTTAGCTTCAGGGGCGAGGATATCCGTGACGGTTTTCTTAGCCACTTGAGAAAGGCTTTTCAACAGAAGAATATAAAAGCCTTTATAGATGATCAACTTCAAAGAGGAGATGAAATTTGGCCATCACTTGTTGAAGCAATTGAGGGATCATTCATTTCCTTGATCATATTCTCACCAGACTATGCTTCTTCACGTTGGTGTTTGGAAGAAGTTGTCAAAATACTTGACTCCAAACACAAGTACCAACGGATCGTGATACCTGTTTTCTACCGTGTAGATCCCACATGTGTACGGCATCAAACGGGGACTTATGAAAATTCATTTGCTGAACATGGAAAAAATTATGATCCCAGCAAGGTGCAAATTTGGAGAGATGCTTTGAACAAATCTGCTGATCTAGCAGGAATTAAGTCATCTGATTTTCGAAATGATGCTGAGGTGGTTGAAGAAGTCGTCAATCTTTTGTTGAAGAGATTGTGTAAATACCCAGTTAACTCAAAAAGACTTATTGGGATTGACAGACAAATGACAGATGTAGAAAGGTTGTTACGTCAAGAATCAGATCGCCCTCTTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACCATTGCAAGTGAAGTATGTAACAAACTTCAGTCTGAATATAATAGTTGTTGTTTTTTGGAAAATGTAAGAGAAGAATCATCAAGATCACATGGTATTAAATCTTTGAAAGAAAAGCTCTTTTCTAAATTATTAGGAGAAGTTGTGAAAATTGACACACCAAATGGATTGTCCAATGATATTGAGAGAAGGATTGATGGTATGAAGGTTCTTATTGTTCTTGATGATGTGAGTGATTTAGACCACCTAGAAAACTTATTAGGTGAAGCTCGTGATGGGCTTGGATCAGAGAGTAGAATAATTGTAACAACTAGAGACAAGCAAGTGCTTAGTACTGCTTGCAAAGCTGATGATATACACGAGGTTGGGGAGTTGAGTCCCAGTGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATTTGGAAAATGAGTATCGTGAGCTATCGAAGAGGGTGGTTGATTATGCCAATGGCACTCCATTGGTTCTTAAAGTTTTGGGACGTCTTCTTCATGGAAAAGACAAGAAAGTATGGGAAAGTCAGCTAAACAAGCTTAAAAAAATGCCAGACCAAAAAGTTTACGATGTAATGAGATTGAGTTATGATGATCTAGATCGCAAAGAGAAAAAGATTTTTTTAGATCTTGCATGTTTCTTCATTGGATTGGATTTGACAGTGGGTGACATAAAAAGTTTATTGAGAGATGGTGAATGTGATAATTCAGTGACTGTTGTGTTTGAAAGGCTGAAAGATAAAGCTCTTGTAACTCTTTCTGAGGATAATAAGAGAAATGGTGTATCTATGCATGATACCATACGAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTAGTGAAGACCCTGGAAGCCGTAGTCGGTTATGGGATTTTGATGACTGTAGGGAAGTACTGGAAGATAATGACAAGGGGACTGAGGCCATCAGAAGCATACGTGTGTTTAGTTGGACGTGTTTGAAGTTAAGCCCCCATGCATTTGCTAAGATGAGAAAACTACAATTTTTGGATTACTATGGCTCTTGCGATTGTCCTCGAGGGCTTCAATCTTTGTCATCTGAACTACGATATCTTCGTTGGACTGATTACCCTCAGGCAACCTTGCCACAGAATTTTTCGGCTGAAAAACTTGTTATATTGGACTTGTCATGTAGCATGATAATAAAACTTTGGGACGGAGTGCAGAATCTCGTGAATTTAAAACAAGTTATACTCTTTGGTTGCGATAACTTGTTAGAGCTGCCAGACTTTTCCAAAGCCACAAATCTTCAAGTACTAGAAGCCGCATATTGTAAGGAGTTGTCAGTGGTGCATTCATCTATTTTCTCTCTCAACAAGCTCAATACATTGGATCTTAGTTTCTGTAGAAAAATTTCCACACTTACCGGTGATACCCATTTGAGCTCCCTCAGTTATCTCAAGCTTCATTGCTGTTATAGTCTAAGGGAATTCTCAGTGACATCAGAGAATATGAAAAAACTGTATTTAACTTTGGCGAAGGTCCGAGCATTGCCCTCATCATTTGAACATCAAAGCAAGCTTGAAATCCTATGTCTAAGATACAGTCACATTGAGGAGTTACCTTCATGCATGAACAAACTTACAAGATTGCAATATCTAGACATAACAAATTGCTTTCGGCTTCAGACAATACCAGAGCTTCCCCCCTCCCTTCAAACTCTCCTTGCTGGATGTGACTTGACTTCCGATGAAGGAGAACTGGAGACTGTATGCTTCCCTACGGTTGCTGAACAATTGAAGGAAAATAGGAAAAAAGTTGAGTTATGGAATTGCTTGTATTTGGATGAACAGTCTCTCATGGCTATTGAGTTGAATGCGCGAATCAACGTGATGAAATTTGCACACCAACATCTATATGCACCAAAACATGATTATGATGATGAAGCTGTGTACTACGTGTATCCAGGAAGCAGAGTTCCAGAGTGGTTGGAGCATAGAACAATGGAGGATTCTATACTTATTGATCTCTCTTCTACTCCATGTTCCCCTCACTTGGCCTTCATTTTCTGCTTCATCCTCGAGGAGCATCAATTAGTATATAATGATAAGTTGGTATTTGAAATCACAATCAGTGATGGTGCATGTGAAGGTAATGAAGACAAGGGCAGTGCCACAATGTGCATACCTAAACCTGACCGAACTGTTTCAGATCATGTGTGTTTGATGTACAGCCAAAGATGTTCTGACTACCTAAATAGCAGAGCCACAGATCTAACAAGATTTAATATCAAGGTTACGATGACGAGGGTATTTGGGCCTGAAGAGGTTACGTTAAAAGGGTTTGGGGTTAGCCCAATAAACCCCTTCGGATATCAGAGTTTCATTAAGCAAATGGATTCAGAACTATGGCTTGATATTTGTAACTTTCTATTATACAAGAGGGTATAG	3213	0.3906	MKFCFLRFLRFISFFQLPCCSHPISIYSVSNKRKLNGGGKSVSETNDPPQTKYDVFVSFRGEDIRDGFLSHLRKAFQQKNIKAFIDDQLQRGDEIWPSLVEAIEGSFISLIIFSPDYASSRWCLEEVVKILDSKHKYQRIVIPVFYRVDPTCVRHQTGTYENSFAEHGKNYDPSKVQIWRDALNKSADLAGIKSSDFRNDAEVVEEVVNLLLKRLCKYPVNSKRLIGIDRQMTDVERLLRQESDRPLVIGIWGMGGIGKTTIASEVCNKLQSEYNSCCFLENVREESSRSHGIKSLKEKLFSKLLGEVVKIDTPNGLSNDIERRIDGMKVLIVLDDVSDLDHLENLLGEARDGLGSESRIIVTTRDKQVLSTACKADDIHEVGELSPSEALELFNLNAFNQSHLENEYRELSKRVVDYANGTPLVLKVLGRLLHGKDKKVWESQLNKLKKMPDQKVYDVMRLSYDDLDRKEKKIFLDLACFFIGLDLTVGDIKSLLRDGECDNSVTVVFERLKDKALVTLSEDNKRNGVSMHDTIREMAWEIVRQESSEDPGSRSRLWDFDDCREVLEDNDKGTEAIRSIRVFSWTCLKLSPHAFAKMRKLQFLDYYGSCDCPRGLQSLSSELRYLRWTDYPQATLPQNFSAEKLVILDLSCSMIIKLWDGVQNLVNLKQVILFGCDNLLELPDFSKATNLQVLEAAYCKELSVVHSSIFSLNKLNTLDLSFCRKISTLTGDTHLSSLSYLKLHCCYSLREFSVTSENMKKLYLTLAKVRALPSSFEHQSKLEILCLRYSHIEELPSCMNKLTRLQYLDITNCFRLQTIPELPPSLQTLLAGCDLTSDEGELETVCFPTVAEQLKENRKKVELWNCLYLDEQSLMAIELNARINVMKFAHQHLYAPKHDYDDEAVYYVYPGSRVPEWLEHRTMEDSILIDLSSTPCSPHLAFIFCFILEEHQLVYNDKLVFEITISDGACEGNEDKGSATMCIPKPDRTVSDHVCLMYSQRCSDYLNSRATDLTRFNIKVTMTRVFGPEEVTLKGFGVSPINPFGYQSFIKQMDSELWLDICNFLLYKRV.	1071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g11235	1070	Gene3D	Ribonuclease Inhibitor	577	750	IPR032675	-
	Seca4g11235	1070	Pfam	NB-ARC domain	236	453	IPR002182	GO:0043531
	Seca4g11235	1070	SUPERFAMILY	Toll/Interleukin receptor TIR domain	43	191	IPR035897	-
	Seca4g11235	1070	ProSiteProfiles	TIR domain profile.	51	215	IPR000157	GO:0007165
	Seca4g11235	1070	SUPERFAMILY	L domain-like	573	843	-	-
	Seca4g11235	1070	Gene3D	-	50	215	IPR035897	-
	Seca4g11235	1070	SMART	till_3	52	189	IPR000157	GO:0007165
	Seca4g11235	1070	Gene3D	-	384	468	IPR042197	-
	Seca4g11235	1070	Gene3D	-	216	379	IPR027417	-
	Seca4g11235	1070	FunFam	Disease resistance protein (TIR-NBS-LRR class)	49	217	-	-
	Seca4g11235	1070	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	53	843	IPR044974	GO:0006952
	Seca4g11235	1070	PRINTS	Disease resistance protein signature	324	338	-	-
	Seca4g11235	1070	PRINTS	Disease resistance protein signature	248	263	-	-
	Seca4g11235	1070	PRINTS	Disease resistance protein signature	419	433	-	-
	Seca4g11235	1070	PRINTS	Disease resistance protein signature	710	726	-	-
	Seca4g11235	1070	SUPERFAMILY	"Winged helix" DNA-binding domain	455	568	IPR036390	-
	Seca4g11235	1070	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	214	478	IPR027417	-
	Seca4g11235	1070	Gene3D	Ribonuclease Inhibitor	751	841	IPR032675	-
	Seca4g11235	1070	Pfam	TIR domain	52	216	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11235	Seca-Chr4	250888636	250892866	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11235	39	821	WRKY Transcription Factor Family	AT4G12020	32.138	1.17e-92	324

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g11235	-		-	aprc:113850949	1103.2