Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11233 ATGGAAGAAGCAGCAACCTCTTCTCGGAGAAACGCGAAGAGGAAGAAGCGAGCCCTGGCGGCTGGGGACCCTGAACTCGAACGTCTCAACACTCTGCCTTGGAACTCTGCTCTTCCTCAAAACGATGATGATGACCCCTTTTCCCTCTTCATTGGCTCCAATGAACTCGAAGGAGCAGGTTTTCTTTCACTTGAGGAGATTGATGAGGCCGAGTATGGTTTGGATATTCCTGAACCCGAAGAAGGCAACAGGAAGCAGAAGTCCAAACAGGACAAAAAATTGAAGAAACAGAAGCAAGATGGGGCGGAATCTAATGGAGAAATGGTTAAGGGTGAGGGTATGAAGTCTAATGAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGGACAAGGCTGCTAGAGAAAACCTGAAAGTTGAGCAGTCAGATACTGGTCTAGATACTGATATGAAGGATGATATTGGGGAAGAGAACATTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGACAGCGATATACAAGCTTGGCTTTAAGGAACCAACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTCGCATTTGGTTTGCCGATTTTGCAACGCATTTTGGAGGAGCGAGAGAAGGCTTCAAAGATGGCCGATGAAAAGGGTGAAGAAGCTGAAAAGTATGCTCCTACAGGCATTTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTTTTTGTGCTTGATGAGGCTGATCGAATGGTGCAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAATATCTCCGCTGAAGATAATTCACAACATGCACAAAGTTGTGTTACAGTTTCTAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCGCTGTCTGCTGATTTTCGCAAGAAGCTGAAGCGTGGTTTGATTCAACAAAAGCAATCATTGACAAATGGATTGAATTCTATTGAGACTCTTTCTGAGCGAGCAGGGATGAGAACCAATGCTGCAATTATTGATCTTACTAATCCATCAATATTAGCAGCTAAACTTGAGGAATCATTTATTGAATGCAGGGAGGAAGATAAAGATGCATATGTGTATTATATTCTGACAGTCCATGGACAAGGCCGCACTATAGTTTTCTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCATCAATGTCTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGAGGTCTTGACATTCCTGGCGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCACCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATTCCTTTCAGCGGTTTCCTTTAGAGAATTCATACATGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAGAGGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAACTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAGTTAACAAATATAAGCAAATGAAAAACAGCTCTAAACAATTGAAGAAATTGCAGACGGAGCTCAACATGCTGATTTCACGTCCTTTACAATCAAGAACATTTTCGCATCGATATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAACAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCATCGCAAAAAGGGAAAAATGGTTGTGATTGGTCAAGAATGTGTGGAAGCGCTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTACGCATGGATTTAAAGGATTTGGCAGGAAAACAGAGAAATATGGCGAATTTAAAAAGAAAAAGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAGAAAGCTAAAGCAGGGAGATGAATAG 2388 0.4204 MEEAATSSRRNAKRKKRALAAGDPELERLNTLPWNSALPQNDDDDPFSLFIGSNELEGAGFLSLEEIDEAEYGLDIPEPEEGNRKQKSKQDKKLKKQKQDGAESNGEMVKGEGMKSNEKKKKKKKKKKKDKAARENLKVEQSDTGLDTDMKDDIGEENIDETEFYAWNELRLHPLLMTAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKASKMADEKGEEAEKYAPTGILRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLIQQKQSLTNGLNSIETLSERAGMRTNAAIIDLTNPSILAAKLEESFIECREEDKDAYVYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQERAEKSWFDRNANSVELVTENYDSEEEQVNKYKQMKNSSKQLKKLQTELNMLISRPLQSRTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHRKKGKMVVIGQECVEALQALRSAGEEVRMDLKDLAGKQRNMANLKRKRKEEKKRLRDQRRKQKRKLKQGDE. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11233 795 SMART helicmild6 491 572 IPR001650 -
Seca4g11233 795 Pfam DEAD/DEAH box helicase 189 397 IPR011545 GO:0003676|GO:0005524
Seca4g11233 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 414 IPR014001 -
Seca4g11233 795 MobiDBLite consensus disorder prediction 70 152 - -
Seca4g11233 795 CDD DEADc_DDX24 176 441 - -
Seca4g11233 795 PANTHER RNA HELICASE 99 742 - -
Seca4g11233 795 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Seca4g11233 795 MobiDBLite consensus disorder prediction 117 132 - -
Seca4g11233 795 MobiDBLite consensus disorder prediction 765 787 - -
Seca4g11233 795 Gene3D - 449 693 IPR027417 -
Seca4g11233 795 Coils Coil 648 688 - -
Seca4g11233 795 MobiDBLite consensus disorder prediction 133 152 - -
Seca4g11233 795 CDD SF2_C_DEAD 452 581 - -
Seca4g11233 795 Pfam Helicase conserved C-terminal domain 463 571 IPR001650 -
Seca4g11233 795 MobiDBLite consensus disorder prediction 760 795 - -
Seca4g11233 795 MobiDBLite consensus disorder prediction 77 105 - -
Seca4g11233 795 Gene3D - 113 415 IPR027417 -
Seca4g11233 795 MobiDBLite consensus disorder prediction 1 51 - -
Seca4g11233 795 SMART ultradead3 184 416 IPR014001 -
Seca4g11233 795 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Seca4g11233 795 Coils Coil 115 140 - -
Seca4g11233 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 588 IPR027417 -
Seca4g11233 795 Coils Coil 758 795 - -
Seca4g11233 795 Coils Coil 225 245 - -
Seca4g11233 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 451 619 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11233 Seca-Chr4 250852587 250862109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11233 166 612 Eukaryotic Initiation Factors Gene Family AT5G11200 27.754 3.04e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11233 K14805 - gmx:100806018 1269.22