Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11227 ATGCCTCGTGGGACTCTTGAAGTTATTTTGGTCAGCGCCAAAGGCCTTGAAGACAATGATTTTCTCTCCAGCATAGATCCTTATGTAATTCTCTCTTACCGAGCACAGGAGCACAAGAGCACTGTGCAAGAAGGTGCTGGATCCAACCCCCAATGGAATGAGAGCTTCCTTTTCACTGTTTCTGACAGTGCTTCTGAACTTAATCTAAGGATAATGGAAAAGGACAACTTCAGTAATGATGATTTTCTCGGTGAGGCAATAATTCCTTTGGATGCAGTGTTTGAAGAGGGTAGCCTTCCAGAGGCTGCTTACAATCTTGTGAAGGACCAAGAATATTGTGGGGAGATCAAGGTGGCTCTCACTTTTACTCCTGAGAGAAATGCTGGTGACCAGGGCTACATTGCAGAGGAGGAGACCTTTGGAGGTTGGAAAGAATCAAATAGGGAATTTTAA 453 0.4437 MPRGTLEVILVSAKGLEDNDFLSSIDPYVILSYRAQEHKSTVQEGAGSNPQWNESFLFTVSDSASELNLRIMEKDNFSNDDFLGEAIIPLDAVFEEGSLPEAAYNLVKDQEYCGEIKVALTFTPERNAGDQGYIAEEETFGGWKESNREF. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11227 150 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
Seca4g11227 150 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Seca4g11227 150 Gene3D C2 domain 2 125 IPR035892 -
Seca4g11227 150 Pfam C2 domain 4 101 IPR000008 -
Seca4g11227 150 SMART C2_3c 5 102 IPR000008 -
Seca4g11227 150 PANTHER C2 DOMAIN-CONTAINING 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11227 Seca-Chr4 250830293 250832383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11227 4 94 C2H2 Transcription Factor Family AT4G21160 34.066 3.93e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11227 - - gmx:100500006 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11227 4 250830293 250832383 Seca4g11227 4 250830293 250832383 ECH