Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g11226 | ATGCCTCGTGGGACGCTTGAGGTTATTTTGATCAGTGCCAAAGGCCTTGACAACACTGATTTTCTCACCAAAATAGATCCTTATGTCATTCTCACATATAGGTCACAAGAGCATAGAAGCTCTGTGCTGAAAGGTGCGGGACCTAACCCACAATGGAATGAGACCTTTCTCTTCACAATTTCTGATGAAGTTTCCGAACTTCATTTCAAAATAATGGATAAAGATACTTATACTCAGGATGATTTTCTTGGTGAGGCGAAAATTCCTTTAGATCCAGTGTTTTATCAGGGTAGTCTTCCAGAAACAGTTTACAATGTGGTGAAGGATCAAGAATATTGTGGGGAGATTAAGGTGGCTCTCACTTTTAATCCTGAGGTAAATTCATAA | 387 | 0.3953 | MPRGTLEVILISAKGLDNTDFLTKIDPYVILTYRSQEHRSSVLKGAGPNPQWNETFLFTISDEVSELHFKIMDKDTYTQDDFLGEAKIPLDPVFYQGSLPETVYNVVKDQEYCGEIKVALTFNPEVNS. | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g11226 | 128 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 124 | - | - | |
| Seca4g11226 | 128 | SMART | C2_3c | 5 | 102 | IPR000008 | - | |
| Seca4g11226 | 128 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 125 | IPR035892 | - | |
| Seca4g11226 | 128 | Gene3D | C2 domain | 2 | 125 | IPR035892 | - | |
| Seca4g11226 | 128 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Seca4g11226 | 128 | Pfam | C2 domain | 4 | 99 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g11226 | Seca-Chr4 | 250823400 | 250824246 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g11226 | 4 | 94 | C2H2 Transcription Factor Family | AT4G21160 | 31.868 | 3.12e-12 | 60.1 |