Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11209 ATGAAAATTAGAGATGAGAAAGATATGGAAGCAACTATATTGAGTGGTAATGGAACAGAAGCTGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTTGTTGGGAGTGGTTCTTTTGGTGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACGGTTGATCATCCTAACATTGTTAAACTAAAGCACTGTTTCTTTTCAACTACCGAGAAAGATGAGTTGTACCTTAACCTGGTTTTGGAGTATGTACCTGAAACTGTCTACAAAGCTTCAAAGCACTATATTAGGATGCACCAACATATGCCTATGATTTATGTGCAACTGTATACATACCAGATATGTCGCGCATTAAATTATTTACATGAAGTGCTTGGCGTCTGCCATCGTGACATCAAACCCCAGAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCTCGATATTACAGAGCTCCAGAACTTATCTTTGGAGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGCTCCTCCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCGCATCCATGGCATAAGGTTTTTCACAAGAGAATGCCACCTGAAGCAGTGGATCTTGTGTCGAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCATTCTTCAATGATCTGCGAGACCCAAATGCACGCTTGCCAAACGGACAACCACTACCTCCCCTGTTCAATTTCACACCTCAAGAACTGGCAAATGCACCTGATGAGTTGCGACAACGTCTTATCCCTGAGCATGCAAGGAGCTGA 1116 0.4265 MKIRDEKDMEATILSGNGTEAGQIITTAIGGRDGQPKQTISYMAERVVGSGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNIVKLKHCFFSTTEKDELYLNLVLEYVPETVYKASKHYIRMHQHMPMIYVQLYTYQICRALNYLHEVLGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFNDLRDPNARLPNGQPLPPLFNFTPQELANAPDELRQRLIPEHARS. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11209 371 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 7 370 - -
Seca4g11209 371 Gene3D Transferase(Phosphotransferase) domain 1 122 370 - -
Seca4g11209 371 Pfam Protein kinase domain 42 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11209 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Seca4g11209 371 FunFam Glycogen synthase kinase-3 beta 26 121 - -
Seca4g11209 371 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Seca4g11209 371 SUPERFAMILY Protein kinase-like (PK-like) 41 353 IPR011009 -
Seca4g11209 371 CDD STKc_GSK3 37 329 IPR039192 -
Seca4g11209 371 FunFam Shaggy-related protein kinase kappa 122 370 - -
Seca4g11209 371 ProSiteProfiles Protein kinase domain profile. 42 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11209 371 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Seca4g11209 371 SMART serkin_6 42 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11209 Seca-Chr4 250670269 250673800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11209 48 329 Core Cell Cycle Gene Families AT3G48750 36.426 8.44e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g11209 Pkinase 4.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11209 K00924 - gmx:100811346 721.85