Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11208 ATGAGTTTTGGGGGATTTCTAGACAACAACAACACGGGTGGTGGCGGTGTGAGAAACGTAGCAGATATTCCATACAGTAACGGAACCACTACCACCGACCACAACCACAAGAACGATAGAATGCCCTTTGGTGCAATCTCTCAACCGCGTCTTGTCACTACTACTCCCATTCTAGCCAAATCCATGTTCAACTCCCCTGGCTTGTCTCTAGCACTTCAGCAAACGAATATAGATGGGCAAGAAGATGGGAATAGATCAATGGCTGAGAATTTTGAGGCAAATGGTTTGAGAAGGAGCAGGGAAGAAGATCAAAGCAGATCTGGTAGTGATAACATGGATGGTATTTCCGGTGATGAACAAGATGCTGCCGACAAGCCTCCTAGAAAGAAGCGTTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTGGAACTGAGCAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGCTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGAAGCTATGAGGAATCCCATGTGTTCCAATTGTGGTGGTCCAGCTATGATTGGTGAGATTTCACTAGAGGAACAACATCTTCGGATTGAGAATGCCCGGTTAAAAGATGAACTGGACCGAGTTTGTGCACTTGCTAACAAGTTTCTGGGTCGCCCCATTTCTTCATTGCCAAACTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGTGGGATGAGCACTACTGTGGCTGCAACATTACCTTTGGGGCCTGATTTTGGGGTGGGGATGTCAAATAACCCTTTAGCAATGGTGTCTCCTCCAACTAGACCAACACCTGTGGTGACTGGCTATGATAGATCAATAGAGAGGTCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAGTTGGTGAAAATGGCACAAACTGGTGATCCTCTTTGGATCAGGAGTATGGAAGGGGGAAAGGAAATTCTGAACCATGAAGAATACATGAGAACATTCACTCCTTGCATTGGCTTAAGACCCAATGGTTTTGTCTCAGAAGCTTCTAGAGAGACTGGGATGGTCATCATAAACAGCTTAGCACTTGTTGAGACTCTTATGGATGCGAATCGATGGGCAGAGATGTTTCCTTCTATTATTGCCAGAACCTCCACCACTGAAGTGATATCCAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCGGAAGTTCATGTTATTTCACCTCTGGTTCCGGTTCGTGAGGTGAATTTCCTGCGGTTTTGCAAGCAGCACGCAGAAGGGGTATGGGCTGTGGTTGATGTATCCATAGATACCATAAGAGAAAATTCCGGCGCGCCTAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGACGAAAGCCCAGTTCACCAGCTGTACAGGCCCTTGTTGAGTTCAGGTATGGGGTTCGGTGCCCAACGCTGGGTCACTACCCTACAACGCCAATGCGAGTGCCTTGCCATATTAATGTCCTCCGCAACACCCTCTCGAGACCACTCCGCAATAACCGCAAGTGGAAGGCGAAGCATGTTGAAGCTGGCACAACGCATGACGAACAACTTCTGTGCGGGAGTGTGTGCTTCTACGGTGCACAAATGGAACAAGTTGAATGCGGGGAACGTGGATGAAGACGTTAGGGTTATGACACGTAAGAGCGTGGATGATCCCGGTGAGCCACCGGGTATCGTGCTCAGCGCAGCCACGTCCGTGTGGCTCCCCGTTTCGCCACAGAGACTCTTCGATTTCCTTCGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCCAATGGTGGTCCCATGCAAGAGATGGCCCACATCGCCAAGGGTCAAGACCATGGCAACTGCGTCTCTCTCTTACGAGCCAGCGCGATGAATTCGAATCAGAGTAGCATGCTGATATTGCAGGAAACGTGCATAGACGCGGCGGGGTCGCTTGTTGTGTACGCGCCCGTGGATATTCCGGCCATGCACGTTGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGCTGCCATCGGGGTTTGCCATTGTCCCTGATGGGCCTGGGTCGCGTGGGCTGGAGAATGGGCCCACTGCAAACGGAGGTGATAACGGTAGTGGGGCACGTGTGAGTGGGTCCCTTCTAACGGTTGCGTTTCAGATCCTTGTGAATAGCCTCCCTACGGCGAAGCTCACGGTGGAGTCAGTAGAAACGGTGAATAACCTAATCTCTTGCACGGTTCAGAAGATCAAAGCCGCGCTTCACTGCGAAAGCTAA 2478 0.496 MSFGGFLDNNNTGGGGVRNVADIPYSNGTTTTDHNHKNDRMPFGAISQPRLVTTTPILAKSMFNSPGLSLALQQTNIDGQEDGNRSMAENFEANGLRRSREEDQSRSGSDNMDGISGDEQDAADKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALANKFLGRPISSLPNSSLELGVGGNGFGGMSTTVAATLPLGPDFGVGMSNNPLAMVSPPTRPTPVVTGYDRSIERSMFLELALAAMDELVKMAQTGDPLWIRSMEGGKEILNHEEYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDANRWAEMFPSIIARTSTTEVISNGINGTRNGALQLMHAEVHVISPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESPVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSATPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGPTANGGDNGSGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES. 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11208 825 CDD homeodomain 128 186 IPR001356 GO:0003677
Seca4g11208 825 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Seca4g11208 825 ProSiteProfiles START domain profile. 324 560 IPR002913 GO:0008289
Seca4g11208 825 FunFam Homeobox-leucine zipper protein GLABRA 2 333 556 - -
Seca4g11208 825 SUPERFAMILY Homeodomain-like 112 186 IPR009057 -
Seca4g11208 825 Gene3D - 115 202 - -
Seca4g11208 825 SMART HOX_1 127 190 IPR001356 GO:0003677
Seca4g11208 825 MobiDBLite consensus disorder prediction 94 108 - -
Seca4g11208 825 SUPERFAMILY Bet v1-like 585 818 - -
Seca4g11208 825 SUPERFAMILY Bet v1-like 326 557 - -
Seca4g11208 825 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 125 822 IPR042160 -
Seca4g11208 825 Coils Coil 180 215 - -
Seca4g11208 825 Pfam START domain 333 557 IPR002913 GO:0008289
Seca4g11208 825 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g11208 825 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g11208 825 Gene3D - 399 554 IPR023393 -
Seca4g11208 825 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Seca4g11208 825 MobiDBLite consensus disorder prediction 91 136 - -
Seca4g11208 825 Pfam Homeodomain 129 184 IPR001356 GO:0003677
Seca4g11208 825 CDD START_ArGLABRA2_like 328 556 - -
Seca4g11208 825 SMART START_1 333 557 IPR002913 GO:0008289
Seca4g11208 825 FunFam Homeobox-leucine zipper protein HDG1 116 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11208 Seca-Chr4 250631989 250637435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11208 1 825 Homeobox Transcription Factor Family AT3G61150 65.274 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g11208 START 4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11208 K09338 - gmx:100811873 1420.22