Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11196 ATGGTGGAAGAAAGTGGAGATGCTGTTGCAGTTGATACCCGTTCTACAGAAGACTGGTTGTTGAATGCACAGGAACTTGTTCCTCTTGCTCTTGCTAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGGTGATCATTTCGAAATTGGAACAGATCCCTTCACGCTTATCAGACTTGTCTAGCCACCCTTGCTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTCAGAGAAGCCATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGAAATTGGATTTGAATTTAAAGGATTGTGGCTTGTTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGCCACTTTCAGTGTCTGGTCCTATAGCAGAATCAGATATTGCAACACTCAGCAATATAAAAGAACTACTTGCACGCCTTCAAATTGGTCATTTGGAAGCAAAGCACAAAGCTTTAGACAGACTCTATGAAGTTATGAAAGAAGATGAGAAGAATGTTTTGTCTGTTCTTGGTAGGAGCAATGTTGCTGCTTTAGTTCAATTGCTTACAGGCACAGCAACATCTCCACGGATAAGGGAGAAGACAGTTACTGTCATATGTGCTCTTGTGGAATCAGGAAGCTGCGAAAACTGGCTAGTTTCTGAAGGAGTTTTGCCACCTCTTATAAGGCTTATTGAATCTGGTAGCCCTGTGGGTAAAGAGAAGGCTACAGTCTCACTTCAGAGGTTGTCAATGTCAGCGGAAACAACTCGCGCAATTGTTGGACATGGCGGGGTTCGACCATTGATTGAGCTTTGTCAAACTGGTGATTCTGTTTCACAAGCTGCTGCTGCTTGTGCTTTGAAGAATGTATCAGCTGTCCCTGAGGTGAGACAGGCTCTTGCTGAAGAAGGTATTGTGAAGGTTATGATCAATCTCCTTAACTGTGGAATTTTGCTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACAGCAAGCAATGAGAATCTGAGAAGGTCTGTTATATCAGAAGGTGGTGTTAGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGGGCATTGAGGAATTTGGTTGGATCAGTTTCTGAGGAAATTTTGGTTTCTCTTGGATTGCTTCCCCGTTTGATTCATGTGCTGAAGTCTGGATCCTTGGGTGCTCAACAAGCAGCTGCATCTGTTATCTGCAAGGTTTGCAGCTCAATGGAGATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTTCTTGTGAAGATGCTTGAGGCTAAAGCAAACAGTGCTAGAGAGATTGCTGCTCAAGCAATTGCAAGCTTAATGGTTCTGTCTCAGAACCGCAGAGAAGTTAAGAGGGATGATAAAAGTGTGCCTAATCTGGTTCAGTTGCTTGATCCAAGTCCACAGAACACAGCTAAAAAATATGCAGTTTGTTGCCTTGGATCACTTTCTTCATGTAAGAAATGTAAGAAATTGATGATTTCATATGGAGCAATTGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGTGCTAAAAAGCTGCTTGAGCGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATAG 1689 0.4352 MVEESGDAVAVDTRSTEDWLLNAQELVPLALAKAREVKGFPGRWKVIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLSVSGPIAESDIATLSNIKELLARLQIGHLEAKHKALDRLYEVMKEDEKNVLSVLGRSNVAALVQLLTGTATSPRIREKTVTVICALVESGSCENWLVSEGVLPPLIRLIESGSPVGKEKATVSLQRLSMSAETTRAIVGHGGVRPLIELCQTGDSVSQAAAACALKNVSAVPEVRQALAEEGIVKVMINLLNCGILLGSKEYAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSEEILVSLGLLPRLIHVLKSGSLGAQQAAASVICKVCSSMEMKKMVGEAGCIPLLVKMLEAKANSAREIAAQAIASLMVLSQNRREVKRDDKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11196 562 Gene3D - 338 550 IPR011989 -
Seca4g11196 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 560 - -
Seca4g11196 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Seca4g11196 562 SUPERFAMILY ARM repeat 156 539 IPR016024 -
Seca4g11196 562 Gene3D - 151 337 IPR011989 -
Seca4g11196 562 SMART arm_5 392 431 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 352 391 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 310 351 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 269 309 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 474 515 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 185 227 IPR000225 GO:0005515
Seca4g11196 562 SMART arm_5 432 472 IPR000225 GO:0005515
Seca4g11196 562 Pfam Armadillo/beta-catenin-like repeat 271 308 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11196 Seca-Chr4 250442861 250446426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11196 208 481 U-box Gene Family AT3G54790 28.674 8.36e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11196 - - gmx:100809488 936.791