Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11195 ATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTCGAAAGGGGCGCAGGATTCGTGTTGAGTGGACAAAGCAAGAACGTGACAGTAGAAGATCTGGTGATTCAAGAAAATCTTCATCTAGTTCAAGACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCTGTTCACACCAGGACAAGAGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCCAGGAGGATGCCACTAGAGCTTTGGATGCAACTAACCTGAGCAAGTTTATGGATCGTGTCATCACAGTGGAGTATGCTATAAGAGATGATGATGATAGAAGGAATGGATATAGTCCTGATAGAAGAGGTCATGACTCCCCTGATGGGAGATATGGTCGTGGCAGATCCCCAAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCTCCACCCCGAGATAGGTCCCGATCCTGA 717 0.4351 MTFAQCSISDMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKSSSSSRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALDATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11195 238 MobiDBLite consensus disorder prediction 61 75 - -
Seca4g11195 238 MobiDBLite consensus disorder prediction 158 238 - -
Seca4g11195 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Seca4g11195 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Seca4g11195 238 MobiDBLite consensus disorder prediction 158 178 - -
Seca4g11195 238 MobiDBLite consensus disorder prediction 209 238 - -
Seca4g11195 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 155 IPR000504 GO:0003723
Seca4g11195 238 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 18 99 - -
Seca4g11195 238 MobiDBLite consensus disorder prediction 61 81 - -
Seca4g11195 238 FunFam Serine/arginine-rich splicing factor RS31 76 166 - -
Seca4g11195 238 SUPERFAMILY RNA-binding domain, RBD 23 159 IPR035979 GO:0003676
Seca4g11195 238 Gene3D - 3 65 IPR012677 -
Seca4g11195 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Seca4g11195 238 SMART rrm1_1 85 151 IPR000504 GO:0003723
Seca4g11195 238 Gene3D - 66 204 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11195 Seca-Chr4 250433214 250436662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11195 25 158 Eukaryotic Initiation Factors Gene Family AT1G49760 27.083 3.67e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11195 K12893 - gmx:100797778 350.132