Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11194 ATGGCAGGAGCTGAAGCTACCAAATATGCTTCTCCTACAACCACTTCCACAAACAACATAGCCAAATCAAACAAGCCCACCATCAAGAGATTCATTGGGGTGAGGCAGAGGCCTTCAGGAAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCAGCTAGAGCATATGATGAAGCAGCTAGAGCTTTGCGTGGGGAAAATGCCAGAACCAATTTTGCATCAGTGAACAAAGCCACAGACCAATCAGGCTCTGCCCCTTGTAGTGAAGGGCTATCACAAACTGGTTCTGAAGGTAGAAATGGTTTAAGCTTTGCTTCCTTGAAAGCCAAGCTGAGCAAGAATCTTCAGAGCATTATGGCCAGAGCAAGTGATAACAAATCCTCATCAAAAAGCAGGGTGAGTGACCATTTCACCTTTGCTAGCATATTCCACTGTAGTAGGAGTAATTACCAGTACCAAATCCCTGCAGTGGATATGAAAAGCATTGAGAAAGTGGTGCAGCCTAGTATCATTGTTCCACCTGTAGATGGTGATCATTACCCTGCTGCTCAAAGTTGGGAAGCTTCTAGTGTCTCTGACTGTAGCTCTGAATGGGTTGGGTTCCAGCAGCAACATGGGTTGGACTCTGATGGGTCTGATATAGGAGAGGTTAGTGTTGGTGATCAAGGGTTCTTGGAACAACTCATGGGGTGGGTTGATAGCCCTGATGTTTATGCAAGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTCTCTTCTTCTGTGCTTGTGCCCCCAACTTTCTCTGGCTCTCCTTATGACTGTGGCTCCCCTTATAGTGGTTATGCCTCTCCATATAACGGTTGTGGCTCCCCATATAATAGTTATGCCTCTCCATACTATGGTAGGAAGTAA 933 0.4598 MAGAEATKYASPTTTSTNNIAKSNKPTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASVNKATDQSGSAPCSEGLSQTGSEGRNGLSFASLKAKLSKNLQSIMARASDNKSSSKSRVSDHFTFASIFHCSRSNYQYQIPAVDMKSIEKVVQPSIIVPPVDGDHYPAAQSWEASSVSDCSSEWVGFQQQHGLDSDGSDIGEVSVGDQGFLEQLMGWVDSPDVYASEGSRSKRFKVSSSVLVPPTFSGSPYDCGSPYSGYASPYNGCGSPYNSYASPYYGRK. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11194 310 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
Seca4g11194 310 MobiDBLite consensus disorder prediction 91 112 - -
Seca4g11194 310 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g11194 310 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Seca4g11194 310 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Seca4g11194 310 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Seca4g11194 310 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Seca4g11194 310 MobiDBLite consensus disorder prediction 8 22 - -
Seca4g11194 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 191 - -
Seca4g11194 310 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Seca4g11194 310 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Seca4g11194 310 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Seca4g11194 310 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11194 Seca-Chr4 250426603 250427535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11194 14 88 AP2-EREBP Transcription Factor Family AT5G19790 61.333 3.64e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g11194 AP2 9.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11194 K09286 - gmx:100799444 406.757