Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11192 ATGATGGGTTCGGATACCAATTTGGTGACTACAATCATTGGGTTTGGATTAAGTGCAACTTTCATTGTATTTGTCTGCACAAGAATAATTTGTGGAAGAATACGAGGGCGTGTGGGATCACGGTCTATGTATGAGCTTGGATCGAGAGCAGATATACAACGGGTAATTTCAGCTGTGAGTGCAGAATATCATGCTAATGACCCTGAACCTGCTTTTGTTGCTGCAATCCCCACATTGAATTTCAATCCAGAGGCCTTCAGTTCCATTGAATGTACACAATGTGTGATATGTTTGGCAGAGTACAAAGACAAAGAATTATTGCGCATCATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACGTGTCCTGTTTGCCGTTTGCCATTGCACAATGTTTCTGAAACAAAACATGTGATGAGACCTGTAACATTTACCATCAACCGATCTCTTAATGAGTCTAATACTTCAGAAAGGAACACAGGTAACGAGAGGCAAGATGAACCTAATGCTAGTAACTCCATACAGATAACTTCTGAAGAACCAGAAGCAAGGCAGTGA 588 0.4031 MMGSDTNLVTTIIGFGLSATFIVFVCTRIICGRIRGRVGSRSMYELGSRADIQRVISAVSAEYHANDPEPAFVAAIPTLNFNPEAFSSIECTQCVICLAEYKDKELLRIIPYCGHTFHLSCIDIWLRKQSTCPVCRLPLHNVSETKHVMRPVTFTINRSLNESNTSERNTGNERQDEPNASNSIQITSEEPEARQ. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11192 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Seca4g11192 195 SMART ring_2 94 135 IPR001841 -
Seca4g11192 195 SUPERFAMILY RING/U-box 93 143 - -
Seca4g11192 195 Pfam Ring finger domain 93 136 IPR001841 -
Seca4g11192 195 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Seca4g11192 195 MobiDBLite consensus disorder prediction 175 195 - -
Seca4g11192 195 MobiDBLite consensus disorder prediction 159 195 - -
Seca4g11192 195 CDD RING-H2_EL5-like 93 136 - -
Seca4g11192 195 PANTHER OS11G0150450 PROTEIN 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11192 Seca-Chr4 250410921 250412191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11192 64 136 C3H Transcription Factor Family AT1G20823 40.476 1.02e-17 75.9