Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11189 ATGAGCGTGGAGATGCAGCTAAGAAGGTTCAATTCAATGGAACGGAGGCCTAGAATGCTGAAGGATTTTCTGAGCGAGAATCTAAATTCATGTTCCTCAAGCGGGTTCAAGTCATTTCCAAGAAAACCACCAAACGGCGTCGTTTCACCTTCCCGTAACAGCATGCACAGCCTCATAGAAAGGGAACTCAATTCGTATAATTCATCATCAAAATCGACCTTCCAAACGCTGATGAACACGATAAGGAGCATCTCTTTCTTCAACTCGGTGAGAAAATCACCCTCCGTGCTTTCTCTACCGCGAAGCCTCTCACGGAAGCTATCATCATCAAGGAGGAGAAGAAGCCAAGGATGCAAAGAAAGCAGCGAAATCAAAATCAGCACCGTCAAGATCAAGGACATCATACGGTGGAAATCGTTCCGGGACCTAGTGGAGGAGCATAACCTTCACCACCAACAACAACAACCTTCTCTTCCGTCACCGCCACTATCACCGTCGGATTTTCGCCGTTGCACGACGGAATCTACCTTCACAACTACCACCGTCACCACTTGTAGTAGCAGTAGTTGTGGCTCTAGCTGGAGCGACGGTGATTTTTTTACCGCTACGTGGGAAGCACAAAACGACAGCGTTGAAGCGGGTAAAAAATTGTCGTTTTCACCCTTTTTTGTCGGCAAGGATTCGGTGGCACCGTACGCGGCGGCCGTGGGGGCCAAGGAGGTTTTAACTTGTCAAGAAGATGAACAACACAGTCCAGTTTCAGTTCTTCAGGTTGGAGAAGATGAATTCTCACTTTTTGATCAAAGCCTTGCCAATATTGAAAGGAGAAAACAAAAATTCATACAAACCGTTCAGAAATTCGAGAGTCTTGCAAAATTTGACCTTGCAGACTTAGACCAATGTCTCTCATTGGATGAGAACTCTGTTTATGATGAAGATAGTGATTATGATGACAAGGATCAAAAAGTTGAAGAACAAGATTGGGTTGAGGAAAGGGCAAAGAAGCTACTACATTGTGTTAAAGCAACAGCTTCATCAGTGCAGAAATGTAAGGACTACTTGGATACAGTTCTGTTGGATTTTTTCAGGGAAGAACTAACTGGAAGTATAAACCAAGATAGGAATGGCGAGGAGTTTGAGTGGGAGATATTGGGAATAGCTGAGGATTGGATAAATGGGTCATTTACTTATGATATAGGGCATGTGGATAAGGATGCTTATATCAAGGACATGGATAGGAGAGTTCGATGGAGCAAGTTTGAGGAGGAGCAAGGAGAATTGGTTTTGGAGATTGAGACAGCCATATTGCATAGTTTGGTTGCTGATCTTCTGGACCTGGATGGTTAA 1347 0.4425 MSVEMQLRRFNSMERRPRMLKDFLSENLNSCSSSGFKSFPRKPPNGVVSPSRNSMHSLIERELNSYNSSSKSTFQTLMNTIRSISFFNSVRKSPSVLSLPRSLSRKLSSSRRRRSQGCKESSEIKISTVKIKDIIRWKSFRDLVEEHNLHHQQQQPSLPSPPLSPSDFRRCTTESTFTTTTVTTCSSSSCGSSWSDGDFFTATWEAQNDSVEAGKKLSFSPFFVGKDSVAPYAAAVGAKEVLTCQEDEQHSPVSVLQVGEDEFSLFDQSLANIERRKQKFIQTVQKFESLAKFDLADLDQCLSLDENSVYDEDSDYDDKDQKVEEQDWVEERAKKLLHCVKATASSVQKCKDYLDTVLLDFFREELTGSINQDRNGEEFEWEILGIAEDWINGSFTYDIGHVDKDAYIKDMDRRVRWSKFEEEQGELVLEIETAILHSLVADLLDLDG. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11189 448 Coils Coil 270 290 - -
Seca4g11189 448 MobiDBLite consensus disorder prediction 101 121 - -
Seca4g11189 448 PANTHER OS04G0572500 PROTEIN 5 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11189 Seca-Chr4 250369195 250372513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11189 13 444 TRM (TON1 Recruiting Motif) Superfamily AT4G00770 30.435 2.90e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11189 - - gmx:102661341 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11189 4 250369195 250372513 Seca4g11189 4 250369195 250372513 ECH