Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11187 ATGGATATGAAGGTGGCAAGGAGAACTGAACGAACTGGGACAACATGTGTGTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAAGTTTTTGCACGGGGAAACACCACTGCCATCTACTTCTTATCATAATGCCTATACTGCACATCCTTATCCAAGGAAGCGCCATTCCTCCTCTGAGAACACCACCCCTAAGTACAACTCAAAGACAGTGTTGATCAGAAAGAGTGGATATGGGGGAGATGGGACACGTGTCACTGAGGCTTCTCAGAAGCCGTCGCTGACTATATGCAGATACTGGATGGATGGCAATTGCGTGCACGGTGACAAGTGCCGGCATTTACATTCATGGTTTTATGGTGATGGGTTTTCCACGTTAGCAAAGCTTCAAGAACACAAGAAGGTTGTCACTGGGATTGCATTTCCCGCTGGATCAGACAAACTTTATTCTGGAAGTACTGATGGGACAGTTCGGATATGGGACTGCCATACTGGTCATTGTGATAATGTGATAAATCTTGGTGCTGAAGTTGCCTCTTTAATCCATGAGGGCCCATGGATTTTTGTCGGTCTGCAGAATGCTGTTAAGGCTTGGAATATTCAGACCGCTTCAGAGTTTACTCTTGATGGACCCAAGGGGCGAGTCCTTGCCATGACTGTTGGCAATGATACATTTTTTGCTGCGGCAGAGGATGGCGTAATTTCTGCATGGAGAGGCAGCTCTTCTTCTAAGTCTCCTTTTGAACTGGTTGCGTCACTAAGTGGCCACACTAATGCTGTGGTCTGCCTGGCTGTTGGAGGCAAGATGCTGTTCTCAGGGTCCATGGACCAAAGCATAAAGGTTTGGGACCTTGATACATTAGAGTGTAAAATGACACTCAATGAACATACTGACAAAGTCACATCCCTTATTTGTTGGGACCATTATTTATTATCCAGTTCATCTGACTGCACTATTAAGGTCTGGGTTGCTACTGAAGAGGGAACTTTGAAAGTGACATATACGCACACTGTGGAAAGTGGTGTTCTTGCACTTTGTGGGATGACTGATGCAGAAGCCAAGCCAATATTGTTCTGCTCATGCAGAGACAATTCAGTTCGCCTGTATGAATTGCCATCATTTTTAGAGAGGGGTCGATTATTTGCAAAACGAGAAGTTCGATCAATTGAGATTGGTTCCAGTGGGCTTTTCTTCACTGGGGACGGGACTGGTTTGGTGATGGTCTGGAAATGGTTGGAAGAGCCCAAGGTGTTATTGTGCAACTGCGCAGAGGGGGATATAACTGATTATTTTTCCCTGAAGCCTGAACACTGA 1317 0.4571 MDMKVARRTERTGTTCVYWLAGRCNRNPCKFLHGETPLPSTSYHNAYTAHPYPRKRHSSSENTTPKYNSKTVLIRKSGYGGDGTRVTEASQKPSLTICRYWMDGNCVHGDKCRHLHSWFYGDGFSTLAKLQEHKKVVTGIAFPAGSDKLYSGSTDGTVRIWDCHTGHCDNVINLGAEVASLIHEGPWIFVGLQNAVKAWNIQTASEFTLDGPKGRVLAMTVGNDTFFAAAEDGVISAWRGSSSSKSPFELVASLSGHTNAVVCLAVGGKMLFSGSMDQSIKVWDLDTLECKMTLNEHTDKVTSLICWDHYLLSSSSDCTIKVWVATEEGTLKVTYTHTVESGVLALCGMTDAEAKPILFCSCRDNSVRLYELPSFLERGRLFAKREVRSIEIGSSGLFFTGDGTGLVMVWKWLEEPKVLLCNCAEGDITDYFSLKPEH. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11187 438 SUPERFAMILY WD40 repeat-like 103 412 IPR036322 GO:0005515
Seca4g11187 438 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Seca4g11187 438 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Seca4g11187 438 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Seca4g11187 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 293 IPR001680 GO:0005515
Seca4g11187 438 ProSiteProfiles Zinc finger C3H1-type profile. 10 36 IPR000571 GO:0046872
Seca4g11187 438 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Seca4g11187 438 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Seca4g11187 438 SMART c3hfinal6 11 35 IPR000571 GO:0046872
Seca4g11187 438 Gene3D - 113 243 IPR015943 GO:0005515
Seca4g11187 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 287 - -
Seca4g11187 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Seca4g11187 438 Pfam WD domain, G-beta repeat 126 162 IPR001680 GO:0005515
Seca4g11187 438 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Seca4g11187 438 Pfam WD domain, G-beta repeat 289 323 IPR001680 GO:0005515
Seca4g11187 438 PANTHER - 52 418 IPR044715 -
Seca4g11187 438 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Seca4g11187 438 Gene3D - 244 432 IPR015943 GO:0005515
Seca4g11187 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 162 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 123 162 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 247 284 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 287 324 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 374 411 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 202 239 IPR001680 GO:0005515
Seca4g11187 438 SMART WD40_4 328 371 IPR001680 GO:0005515
Seca4g11187 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 323 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11187 Seca-Chr4 250353965 250357290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11187 184 371 Acyl Lipid Metabolism Gene Families AT3G18860 26.425 7.36e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g11187 WD40 3e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11187 - - gmx:100787799 649.047