Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11182 ATGGCTGCGGAAGCTTCTCGAAACGTTGATCTCACGCTGGGAGAACCCAAGGGACCCAAAGAGGAGCCCCAAACGGAAGAAGGGTCACCATCAGCTGCAGCAATACGCGTGATGCCGGTGGCGGTGCACGTGCCCGCCGGGATGTCCATGTCTATGCAAGCCCAGGCCCAGGCCCAGGCCCAACAGCCACCGCAAAAGAGGGCCTCCACCAAGGATCGTCACACCAAGGTGGAGGGCCGAGGCCGGAGGATCCGAATGCCCGCCACGTGTGCGGCTAGGATCTTTCAGCTGACCCGGGAACTCGGGCACAAGTCCGACGGTGAGACCATCCGGTGGCTCCTCGAACACGCCGAGCCCGCAATCATCGCCGCGACGGGAACCGGCACCGTTCCCGCCATCGCGATGTCCGTCAACGGCACCCTGAAGATCCCAACCACCTCCCCTTCCTCCACTTCCCCCGGAGACCCACCCGAGAAGAAGAAACGCAAACGACCAGTGAACAGTGCATACGTTGACATAAACGACGGCGCCGTTTCAGTAACGGCCGGGCTAACAACCTCGAATAACCCGAGCAACCCAACCACTACAATTCCGCAACAAACCGCGATTCCGTTACCGCAAAACGTGGTCCCCATGTGGGCCATACCCTCAAACGCCGTCGTTCCAGCCGCAGGCGCGTTTTTTGTGGTCCCTCCCATGGCAGCAGCACCTTCAAACCAGCCTCAATTCTTTACCATAGCTCGACCAATCTCCGCTTTCGTCTCCTCCATGGTCACTCCGATTCAACTTCAACCAACCTCATCTTCGTGTTCCACCGCTCCATCATCAAAATCGCCGGCGAGAGCCACCGTCATGGCGCCTACCACCACCGCCGCCGCAACCTCCACCACCACTACGCAGACGCTGAGGGATTTCTCCTTGGAAATATACGACAAGCAAGAGCTCCAATTTATGTCGCGCTCTTCTTCGAAGCATTGA 978 0.59 MAAEASRNVDLTLGEPKGPKEEPQTEEGSPSAAAIRVMPVAVHVPAGMSMSMQAQAQAQAQQPPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSSTSPGDPPEKKKRKRPVNSAYVDINDGAVSVTAGLTTSNNPSNPTTTIPQQTAIPLPQNVVPMWAIPSNAVVPAAGAFFVVPPMAAAPSNQPQFFTIARPISAFVSSMVTPIQLQPTSSSCSTAPSSKSPARATVMAPTTTAAATSTTTTQTLRDFSLEIYDKQELQFMSRSSSKH. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11182 325 Pfam TCP family transcription factor 69 159 IPR017887 -
Seca4g11182 325 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 310 IPR005333 GO:0003700
Seca4g11182 325 MobiDBLite consensus disorder prediction 266 297 - -
Seca4g11182 325 ProSiteProfiles TCP domain profile. 70 124 IPR017887 -
Seca4g11182 325 MobiDBLite consensus disorder prediction 52 80 - -
Seca4g11182 325 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g11182 325 MobiDBLite consensus disorder prediction 141 167 - -
Seca4g11182 325 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11182 Seca-Chr4 250315126 250316154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11182 63 324 TCP Transcription Factor Family AT2G45680 57.860 9.75e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g11182 TCP 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11182 - - gmx:100804760 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11182 4 250315126 250316154 Seca4g11182 4 250315126 250316154 ECH