Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11180 ATGGATAATCATGGGTCTTCACCTCCATATGGGTATCCAAACCCATATTTCTACCCTGGAAACACTCCTCCATACCCACCTCCAGCTTCAGCTCCAGGTCCTGATCCATATGCAGCAACAGCACCTCCTCCTTATCCATATCCACCTAGTCCTGCACATTCCTTCAACTACTCTTCCTATCCCCCACCTCCTCCACCAACATCTTCATCTGGCCCCTTTGACTTCCCCATTCATCAGCCATCTCATGCTTATCCTTACCCCTACCAAGCCCCTCCAGGGTGGAACACAACAGGAGGTGGTGTAGTATCTCAAACCAGTGATGATTCCAAGTATCCCCCTCATAGTTCTTCTGCTTACCCTCCTTTGGATGATCTCATGGGCAATGTTCGGCTGTCTGATTACCAGCCATCTGCACCTCCAGCATTGACACATTCCATTTCAGTTCCAAATCAAGACAAGAGAGAGGAGTTTCATGGTTATTATGCTAGTAACTCCTTCTCAGGTTGGGGAGCCACCAACTCTGTTCAGGGGGATTCTTCCAAACTTTCAGCTTATTCTGGCTCATTTAGTGAGTCAGTGCACAGTCAGAGTTTGCAGATTGTTCCATTGCAGAACAAAGGGTCTCTGAGAGTTTTGCTTCTGCATGGTAATTTAGATATATGGGTCCATGGATCTAAAAATCTTCCAAATATGGACATGTTCCACAAAACCTTGGGGGATATGTTTGGTAGATTACCTGGTAATGTGAGCAACAAGATTGAGGGTACGGTGAGTAGGAAGGTTACTAGTGATCCTTATGTGTCAATTTCTGTATCAAATGCTGTAATTGGGAGGACTTTTGTGATTAGCAACAGTGAAAACCCTGTGTGGGAGCAACACTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCACAGTGGCAATTCCAGTGGAACAAATATACTCAGGGGAAAGAGTACAAGGGACCTACCCTATCCTGAATAACAATGGGAAGCCTTGTAAGAAAGGTGCTGTCTTGAGCTTATCCATTCAGTACACTCCAATGGAGAAACTGAGCATTTATCATCAAGGAGTTGGAGCAGGGCCAGAGTACATTGGGGTTCCTGGCACATATTTTCCATTGAGAAAAGGTGGAAATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGCTGCCTCCCCAATGTGATTCTTGACCATGGGATGTATTTTGCTCATGGAAAGTGTTGGCATGATATCTTTGACGCCATACGTCAAGCTCAGCGTTTGGTTTACATTACAGGATGGTCAGTCTGGCACAAAGTTAGGTTGGTAAGGGATGCTGGTCGTGGATCAGATCTCACCCTGGGTGATCTTCTTAGGGCCAAGTCTCAGGAAGGAGTAAGGGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGAAGCATTCTTGGATATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGCCGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGTGTTGCTGGAAAACGACATAGCTGGGTCAAGCAACAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTGTGTGATGGCCGATATGATACTCCCCACCATCCCCTCTTTAAGACACTGCAGACACTGCATAAGGATGATTATCACAACCCTACTTTCACGGTAATCTCTTATTTCCGTGTCCCCGGTAATGTTGGTGGCTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAAAGGGATAAATAAGTTGAAGAGTTCATCATATGATGATGCTTTGCTCAGGCTAGAAAGAATCCAAGATATTATCAGTGCATCTGATCCTGTGAATGTTAGTGATGATAATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCTGTTAAGGGATTTCCAAAAGAACCAAAAGATGCATCAAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGATCTTCATACAATTGGAGTCAAAATAAGGAGCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGAAAAGATAAAGGCAAATGAGAGATTTGCAGTATACATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACCCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAACATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGAGAGGCTATAGATATGCATGAGAATATTGCTGTGTCTGGAACTGCTCCCCCAGCAAATAGTCCACAAGCAAATAGTCGAAATAGCCGACGTTTCATGATATATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATTTTGGGGTCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCAACATACATGGGCAAGAAAACAGTCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACGGGAACAATTGAAAACTGCTTCTTACAACCAGAAAGCCTGGAATGTGTGAGAAGGGTTAAAACAATGGCTGAACTGAACTGGAAACAATTTTCAGAAAATGATGTAACAGAGATGAGAGGGCATCTACTCAAGTACCCAGTAGACGTTGATAGAAAGGGTAAGGTTAAATCCATTCCAGGCCAAGAAGAGTTCCCTGATGTGGGAGGAAAGATAGTAGGATCATTTATTGCCATTCAAGAGAATCTAACCATTTGA 3120 0.4301 MDNHGSSPPYGYPNPYFYPGNTPPYPPPASAPGPDPYAATAPPPYPYPPSPAHSFNYSSYPPPPPPTSSSGPFDFPIHQPSHAYPYPYQAPPGWNTTGGGVVSQTSDDSKYPPHSSSAYPPLDDLMGNVRLSDYQPSAPPALTHSISVPNQDKREEFHGYYASNSFSGWGATNSVQGDSSKLSAYSGSFSESVHSQSLQIVPLQNKGSLRVLLLHGNLDIWVHGSKNLPNMDMFHKTLGDMFGRLPGNVSNKIEGTVSRKVTSDPYVSISVSNAVIGRTFVISNSENPVWEQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGTVAIPVEQIYSGERVQGTYPILNNNGKPCKKGAVLSLSIQYTPMEKLSIYHQGVGAGPEYIGVPGTYFPLRKGGNVTLYQDAHVPDGCLPNVILDHGMYFAHGKCWHDIFDAIRQAQRLVYITGWSVWHKVRLVRDAGRGSDLTLGDLLRAKSQEGVRVLLLVWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRVAGKRHSWVKQQEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPHHPLFKTLQTLHKDDYHNPTFTVISYFRVPGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGINKLKSSSYDDALLRLERIQDIISASDPVNVSDDNPEAWHVQIFRSIDSNSVKGFPKEPKDASSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQNKELGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEAGLEATFSPQDYLNFFCLGNREAIDMHENIAVSGTAPPANSPQANSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPQHTWARKQSYPHGQIHGYRMSLWAEHTGTIENCFLQPESLECVRRVKTMAELNWKQFSENDVTEMRGHLLKYPVDVDRKGKVKSIPGQEEFPDVGGKIVGSFIAIQENLTI. 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11180 1039 FunFam Phospholipase D delta 211 358 - -
Seca4g11180 1039 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 214 364 IPR035892 -
Seca4g11180 1039 Gene3D Endonuclease Chain A 419 672 - -
Seca4g11180 1039 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 885 912 IPR001736 GO:0003824
Seca4g11180 1039 SUPERFAMILY Phospholipase D/nuclease 708 971 - -
Seca4g11180 1039 MobiDBLite consensus disorder prediction 21 76 - -
Seca4g11180 1039 MobiDBLite consensus disorder prediction 21 71 - -
Seca4g11180 1039 Pfam Phospholipase D Active site motif 542 576 IPR001736 GO:0003824
Seca4g11180 1039 Pfam Phospholipase D Active site motif 886 912 IPR001736 GO:0003824
Seca4g11180 1039 CDD C2_plant_PLD 211 363 - -
Seca4g11180 1039 MobiDBLite consensus disorder prediction 95 121 - -
Seca4g11180 1039 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 541 576 IPR001736 GO:0003824
Seca4g11180 1039 FunFam Phospholipase D 698 931 - -
Seca4g11180 1039 FunFam Phospholipase D delta 417 664 - -
Seca4g11180 1039 SUPERFAMILY Phospholipase D/nuclease 426 649 - -
Seca4g11180 1039 ProSiteProfiles C2 domain profile. 194 340 IPR000008 -
Seca4g11180 1039 MobiDBLite consensus disorder prediction 96 113 - -
Seca4g11180 1039 PANTHER PHOSPHOLIPASE D 206 1029 IPR015679 -
Seca4g11180 1039 SMART pld_4 541 576 IPR001736 GO:0003824
Seca4g11180 1039 SMART pld_4 885 912 IPR001736 GO:0003824
Seca4g11180 1039 Gene3D C2 domain 211 355 IPR035892 -
Seca4g11180 1039 Pfam Phospholipase D C terminal 959 1029 IPR024632 -
Seca4g11180 1039 SMART C2_3c 217 339 IPR000008 -
Seca4g11180 1039 Pfam C2 domain 216 342 IPR000008 -
Seca4g11180 1039 Gene3D Endonuclease Chain A 697 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11180 Seca-Chr4 250293013 250302502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11180 42 1039 Phospholipase D Gene Family (Wang group) AT2G42010 70.164 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11180 K01115 - gmx:100805294 1638.62