Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11179 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTGTATTCTAAACTTACAAATGCCTACTGTTTGGTTGCCGTTGGAGGTTCTGAAAACTTCTACAGTGTATTTGAATCCGAGTTAGCAGATGTTATCCCTGTGGTTAAGACATCCATTGACAGTACTCGAGTTATTGGCCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTAAGAAATAGTCTACCTGATCAAGTTGTCGTTCAGCAAATTGATGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCGCTCACACACATTGATCTTGACTGGGAAACTGAGGAGATGATTGCAGATGTTCTCGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGTAATACTGTTGCTGGTAGCTACTGTGCTTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACTGTGAATCGGGGCAGTGAATTAATAGCGGCTGGAATGACTGTCAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTCAGAGAAGCCCGGCCAAGTGCCATTGTGGATGAGATGAGGATATCCCTCATTGATACCTATGTCTGA 738 0.4363 MATRLQFENNCEVGVYSKLTNAYCLVAVGGSENFYSVFESELADVIPVVKTSIDSTRVIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQQIDERLSALGNCIACNDHVALTHIDLDWETEEMIADVLGVEVFRQTIAGNTVAGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSELIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRISLIDTYV. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11179 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 Gene3D - 1 225 - -
Seca4g11179 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 SUPERFAMILY Pentein 1 224 - -
Seca4g11179 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Seca4g11179 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Seca4g11179 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11179 Seca-Chr4 250281675 250289266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11179 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 88.163 1.52e-166 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11179 K03264 - gmx:100800352 455.677