Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11178 ATGATCTTTAGGACACTCCTACTATTCCTGGCCTTTATGGTGACAAATTCAGTGGCTCTCATTGACAAACAGACATATATAATACACATTGACAAGGCCAAGATCAGAGCCTCAGTTCATTCCCAAGACAGTACAAGACCCTGGTTTAAATCAGTCATTGATCTCATCTCTGAAGTTTCACTGGAAAAAGAAGAGATAGCCCCTGAGCTTCTTTATGTTTATGAAACCAACATGTTTGGTTTTGCTGCCCAACTTTCCAATCAACAACTTGAATACTTGAACCAAGTGGATGGTTTCCTTTCAGCCATACCTGATGAATTATTAGCTCTCCACACAACATACACCCCACATTTTCTTGGCCTACAGAATGGAAGAGGACTTTGGAGTGCTCCTAACTTGGCCTCAGATGTGATCATAGGGGTCCTAGATACTGGGATATGGCCTGAACACATCAGTTTCCAAGACTCAGGTTTATCTACAGTACCCTCTCGTTGGAAAGGTTCTTGTGAAGAAGGCACCAATTTCTCTGCCTCAAATTCTAACAATAAGCTTATTGGTGCAAGAGTCTTCCTCAAAGGGTATGAAAAATTTGCTGGAAGAATCAATGAAATTTTGGATTATCGTTCTGCTAGAGATTCACAAGGTCATGGAACACACACAGCCTCAACTGCAGCTGGTAATATGGTGAATAATGCCAGCTTTTTAAGCATTGCAAGAGGTTCAGCCAGTGGAATGAGGTACACCTCAAGAATAGCAGCTTATAAAGTATGCTGGCGTTTAGGCTGTGCTAACTCTGATATATTGGCAGCTATGGATCAAGCTGTTGCTGATGGGGTTGACATATTATCACTCTCTTTAGGTGGTGTTGCCAAACCTTATTACAATGATAGTATTGCCATAGCCTCATTTGGAGCAACACAAAGTGGAGTTTTTGTTTCTTGTTCTGCAGGCAATTCAGGCCCCTCTATATCAACTGTTGGAAATGTTGCCCCTTGGCTCATGACTGTTGCTGCTAGCTACACTGACAGGAGCTTCCCTACAAAAGTGAAGCTTGGGAATGGACAGATTTTTAAAGGTGGCATAGCCGCACTGCTTAACTCTGTGCATAAGGATTGGTCTCCTGCAGCTATCAAATCTTCTCTGATGACTACAGCTTACACATTAAATAATAAAGGTGCTCCAATTTCTGCCATTGGCTCAAATAACTCTGCTGCATTTGCTAACCCTTTTGCATTTGGTTCAGGCCATGTTGACCCAGAAAGAGCTTCTGATCCAGGGTTAGTGTATGATATCACCAACAAAGACTACTTAAATTACTTGTGCAGCCTGAACTATACCCCTTCTCAGATTACTTTATTGTCAAAAGGCAAGTTTACATGTTCAAAAAATTCAGTTCTCCAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTGATATTTAGCACAAGTGCTCTAAACGGTAGCGTGACATACAAGAGGGTAGTCACAAATGTAGGAAATCCCAAAAGTTCATATGCAGTGAAAGTGGAAGAACCAAAGGGGGTATCAGTGAGGGTTGAACCAAGGAGTTTGAGTTTTAGAAAACTGGGTGAGAAATTGAGTTACAATGTGACTTTTGTTGCATATGGAAGAACAATAGCTACTGGTAGTTCATCATTTGGGTCACTTACTTGGGTATAA 1680 0.4137 MIFRTLLLFLAFMVTNSVALIDKQTYIIHIDKAKIRASVHSQDSTRPWFKSVIDLISEVSLEKEEIAPELLYVYETNMFGFAAQLSNQQLEYLNQVDGFLSAIPDELLALHTTYTPHFLGLQNGRGLWSAPNLASDVIIGVLDTGIWPEHISFQDSGLSTVPSRWKGSCEEGTNFSASNSNNKLIGARVFLKGYEKFAGRINEILDYRSARDSQGHGTHTASTAAGNMVNNASFLSIARGSASGMRYTSRIAAYKVCWRLGCANSDILAAMDQAVADGVDILSLSLGGVAKPYYNDSIAIASFGATQSGVFVSCSAGNSGPSISTVGNVAPWLMTVAASYTDRSFPTKVKLGNGQIFKGGIAALLNSVHKDWSPAAIKSSLMTTAYTLNNKGAPISAIGSNNSAAFANPFAFGSGHVDPERASDPGLVYDITNKDYLNYLCSLNYTPSQITLLSKGKFTCSKNSVLQAGDLNYPSFAVIFSTSALNGSVTYKRVVTNVGNPKSSYAVKVEEPKGVSVRVEPRSLSFRKLGEKLSYNVTFVAYGRTIATGSSSFGSLTWV. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11178 559 Gene3D - 342 359 - -
Seca4g11178 559 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Seca4g11178 559 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Seca4g11178 559 Pfam Peptidase inhibitor I9 25 110 IPR010259 -
Seca4g11178 559 Gene3D Peptidase S8/S53 domain 136 341 IPR036852 GO:0004252|GO:0006508
Seca4g11178 559 Gene3D Peptidase S8/S53 domain 360 436 IPR036852 GO:0004252|GO:0006508
Seca4g11178 559 CDD Peptidases_S8_3 110 386 IPR034197 -
Seca4g11178 559 Pfam Fibronectin type-III domain 470 558 IPR041469 -
Seca4g11178 559 Gene3D - 440 559 - -
Seca4g11178 559 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 14 111 IPR037045 -
Seca4g11178 559 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 354 IPR045051 -
Seca4g11178 559 SUPERFAMILY Subtilisin-like 110 427 IPR036852 GO:0004252|GO:0006508
Seca4g11178 559 ProSiteProfiles Serine proteases, subtilase domain profile. 113 559 - -
Seca4g11178 559 Pfam Subtilase family 135 342 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11178 Seca-Chr4 250271911 250273853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11178 263 559 Subtilisin-like Serine Gene Family AT1G01900 45.397 1.91e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11178 - - gmx:100817581 634.409