Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11176 ATGGGCGGTATTGGCAAGACAACCATTACAAGTGAAGTATATAACAAACTTCAGTCTGAATATAATATTTGCTGTTTTTTGGATAATGTAAGAGAAGAATCATCAAGACATGGAATTAAAACTTTGAAAGAAAAGCTCTTTTCTGAATTATTAGGAGAATATGTGAAAATTGACACACCAAATGGCCTGTCCAATTATATTGAGAGAAGAATTGATGGTATGAAGGTTATTATTGTTCTTGATGATGTGAATGATTCAGACCACCTAGAAAACTTATTAGGTGAAGCTCGTGATATGCTTGGATCAGACAGTAGAATAATTATAACAACTAGAGATAAGCAAGTGCTTAGGAGTGCTTGCCAAGCTGATGATATACACGAGGTTGGAGAGTTGAGTCCCAGTGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATCTGGAAAAGATGTATTATCATTATGAGCTATCAAAGAGGGTGGTTGATTATGCCAGTGGTATTCCATTGGTTCTTAAAGTTTTAGGACGTCTTCTTTATGGAAAAGATAAGGAAGTATGGGAAAGTCAACTAAACAAGCTTGAAAAAATGCCAAACAAAAAAGTTTACGATGTAATGAGACTGAGTTATGATGATCTAGATCGCAAAGAGAAAAAGATTTTTTTAGATCTTGCATGTTTCTTCATTGGATCGGATTTGACAGTGGGTGACATAAGAAGTTTATTGAGAGATGGTGAAAGTGATAATTCAGTGACTGTTGTGTTTGAAAGGCTGAAAGATAAAGCTCTTGTAACTTTTTCTGAGGATAATATTAATGGTGTATCTATGCATGATATCATACGAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTAGTGAAGACCCAGGAAGCCGTAGTCGGTTATGGGATCGTGATGACTTTAGGGAAGTTTTGGAAAATGACAAGGGGATTGAGGCCATCAGAAGCATACTTGCACACGATGTGGACCATTTGAAATTAAGCCCCCATGCATTTTCTAAGATGAGCAAACTACAATTTTTCAAATGCATTGGCTCTTGTCAATGTCCTCAAGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTCATTGGATTAATTACCCTCAAGCAACCTTGCCACAAAATTTTTCTGCTGAAAAACTTGTTATATTGAACTTGTCATCATGTAGCAAGATAATAAAACTTTGGGACGGAGTGCAGGTAAATGCATTTATATATATGTGTGTGTGTGTCTTGCTTATTATAATCTGTCTCTTAATTGAAGGAGTACAGAATAAACAACTTTAG 1317 0.3584 MGGIGKTTITSEVYNKLQSEYNICCFLDNVREESSRHGIKTLKEKLFSELLGEYVKIDTPNGLSNYIERRIDGMKVIIVLDDVNDSDHLENLLGEARDMLGSDSRIIITTRDKQVLRSACQADDIHEVGELSPSEALELFNLNAFNQSHLEKMYYHYELSKRVVDYASGIPLVLKVLGRLLYGKDKEVWESQLNKLEKMPNKKVYDVMRLSYDDLDRKEKKIFLDLACFFIGSDLTVGDIRSLLRDGESDNSVTVVFERLKDKALVTFSEDNINGVSMHDIIREMAWEIVRQESSEDPGSRSRLWDRDDFREVLENDKGIEAIRSILAHDVDHLKLSPHAFSKMSKLQFFKCIGSCQCPQGLQSLSSELRYLHWINYPQATLPQNFSAEKLVILNLSSCSKIIKLWDGVQVNAFIYMCVCVLLIIICLLIEGVQNKQL. 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11176 438 Pfam NB-ARC domain 1 212 IPR002182 GO:0043531
Seca4g11176 438 Gene3D - 130 216 IPR042197 -
Seca4g11176 438 PRINTS Disease resistance protein signature 167 181 - -
Seca4g11176 438 PRINTS Disease resistance protein signature 386 402 - -
Seca4g11176 438 PRINTS Disease resistance protein signature 70 84 - -
Seca4g11176 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 226 IPR027417 -
Seca4g11176 438 Gene3D - 1 126 IPR027417 -
Seca4g11176 438 SUPERFAMILY "Winged helix" DNA-binding domain 202 315 IPR036390 -
Seca4g11176 438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 412 IPR044974 GO:0006952
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g11176 Seca-Chr4 250257592 250259093 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11176 3 408 WRKY Transcription Factor Family AT4G12020 35.731 1.11e-56 200
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11176 - - gmx:100796110 477.248