Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11168 ATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTCACTTTCTCAAAGCGGCGGAATGGGTTACTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTGGCACTTATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTTCAAGCTCCAGGTTTGGATCTTTCTCTCTTCTTTTTTTCCTTCTTTCTCATATTGTGTGA 231 0.4372 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRFGSFSLLFFLLSHIV. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11168 76 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Seca4g11168 76 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 CDD MADS_MEF2_like 3 56 IPR033896 GO:0000977|GO:0045944
Seca4g11168 76 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g11168 76 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Seca4g11168 76 FunFam Agamous-like MADS-box protein AGL13 13 66 - -
Seca4g11168 76 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11168 Seca-Chr4 250170039 250170269 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11168 1 60 MADS-box Gene Family AT2G45660 95.000 1.60e-37 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g11168 SRF-TF 8.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11168 - - cit:102626103 110.923