LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11148	ATGCCATCGCGTCCGCCGCCACCGCTTCCCGCCGCGGCGGCCGACACCGCTCCCCGCCATCACCACAACCACCACCGCGAAATGATAATCGGCGGCGGAATCTCCGCCGCCGTCTTCCTAGTGGCGGTTATGATCTCGGCGGCAATCTTCATCTACCGGAAGCTCTCGTACAACCGCACGGCGCCGTTCGAAAACAGCCACCGCCGCTTCTCGTACTCCGTCCTCCGCCGCGCGACGAACTCCTTCTCGCCGTCGACGAAGCTCGGCCACGGCGGCTTCGGGTCGGTGCACAAGGCAACTCTCCCATCGGGTCAGACCGTAGCACTGAAGGTAATGGACTCGCCAGGTTCGATCCAAGGAGAGAGAGAGTTCCACAACGAGCTCTCTCTCTGTTCGAATCTTCGTTCTCCTTTCATTCTCTCCCTTCTCGGTTTTTCCTCAGACCGGCGCGGTCGAAAGCTTGTTCTGGTTTATGAACTCATGCCGAACCGGAGTCTCCAGGATGCGCTTCTGGACCGGCGTTGTCCTGAGCTTATGTGTTGGGCGAACCGGTTCAACGTCGCCGTTTCGGTGGCTAAGGGGCTTGAGTATCTCCATCATCAGTGTGACCCGCCAGTGATCCATGGGGATATAAAGCCCAGTAATGTTCTTCTGGATCGTGACTTTCGGGCCAAGATTGGTGATTTTGGGCTTGCGAGAGTGAAGACAACGGTGGAAGATTCTGGAATGGGGATGGTGGAGGAGAAGAAGAAGGAAGGGGTTGAAGATTGTAGCTCCGTTTCTGTTATGGAGGAAGCGGAGAGCGTGGCGACGAATACTACTGCTGGGTTGTTTGACGCTGAGAGGTCGCCGGAGAGTTGCACGGTTAGGGTTTTGGATTACGATGCTTCGCCTGAGACGGCGGCGGTGGCGTCGCCGGAGACCGTGGGGGTGGATAAAAACAGTGTTCTGTCTGATGGTTGTTTTGATAAGTTCAGCATTGATAGTGGGAATCAGAGGAAGAAGGGTGGTGGTGGTTCTGGGAGGGATTGGTGGTGGAAACAGGAGAGTGGAGGAGGGTCTGAATCTGGGAGGGTGAAGGATTATGTGATGGAGTGGATTGGGAGTGAGATAAAGAAGGAGAGACCTAAGAATGAGTGGGTTGATTCTGGTTCTTCTCCTTGTTCTGGGAGGAACAGTGGAGCTGCATCAGCGACGCCACCACCTAAGGTGAAGAAGCAGAGAAAGAGGTTGGATTGGTGGGCTTCTCTTGATGAGGAGAAGGTTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGCTTTCTAAGAAGAGTAGGAAGAAAAAGAGGAGTCTTGATTGTGGTGGTGAATCGTGGTGGCAGAGAGATGAGGATGCATTGGAGCAGAAGAAGAAGAGAAAGAGTAAAGGTAGTAGAGGGAGTATTGATTGGTGGTTGGATGGTTTGAGTGGGGAGCTTAGGAATGGAAGGAGGAATAGCCAGGATTGGGTGAGTGGGGATATACCAAAGAGTGGTGGAATCAGCAGCACACCAAGTATGAGGGGAACTGTGTGTTACATTGCCCCTGAGTATGGTGGTGGTGGACAGCTATCTGAGAAGTGTGATGTGTATAGTTTTGGGGTTCTGCTTTTGGTTTTGGTTGCTGGAAGAAGGCCACTTCAAGTGACTGCATCACCAATTTCAGAATTTGAGAGGGCCAATCTCATTTCCTGGGCTAGACAACTTGCTCACAATGGGAGGCTTTTGGATCTTGTTGACACTAACCTTCATTCATTGGACAAGGAACAGGCACTGCTCTGCATCACCATTGCCCTTTTGTGTCTGCAGAGATCACCCGGGAAAAGGCCTTCCATGAAAGAGATTGTGGGGATGCTTTCTGGTGAAGCTGAGCCACCCCACTTGCCTTTTGAGTTCTCACCATCACCACCCTCTAATTTCCTGTTCAAGTCCCGGAAGAAGGCTCGGTGA	1992	0.5286	MPSRPPPPLPAAAADTAPRHHHNHHREMIIGGGISAAVFLVAVMISAAIFIYRKLSYNRTAPFENSHRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELSLCSNLRSPFILSLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMCWANRFNVAVSVAKGLEYLHHQCDPPVIHGDIKPSNVLLDRDFRAKIGDFGLARVKTTVEDSGMGMVEEKKKEGVEDCSSVSVMEEAESVATNTTAGLFDAERSPESCTVRVLDYDASPETAAVASPETVGVDKNSVLSDGCFDKFSIDSGNQRKKGGGGSGRDWWWKQESGGGSESGRVKDYVMEWIGSEIKKERPKNEWVDSGSSPCSGRNSGAASATPPPKVKKQRKRLDWWASLDEEKVKVKKNRKPREWWKEEFCEELSKKSRKKKRSLDCGGESWWQRDEDALEQKKKRKSKGSRGSIDWWLDGLSGELRNGRRNSQDWVSGDIPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTNLHSLDKEQALLCITIALLCLQRSPGKRPSMKEIVGMLSGEAEPPHLPFEFSPSPPSNFLFKSRKKAR.	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g11148	663	FunFam	Os07g0541700 protein	161	246	-	-
	Seca4g11148	663	MobiDBLite	consensus disorder prediction	641	663	-	-
	Seca4g11148	663	MobiDBLite	consensus disorder prediction	328	357	-	-
	Seca4g11148	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	206	218	IPR008271	GO:0004672\|GO:0006468
	Seca4g11148	663	Pfam	Protein kinase domain	85	235	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11148	663	Pfam	Protein kinase domain	518	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11148	663	ProSitePatterns	Protein kinases ATP-binding region signature.	88	110	IPR017441	GO:0005524
	Seca4g11148	663	Gene3D	Phosphorylase Kinase; domain 1	46	160	-	-
	Seca4g11148	663	MobiDBLite	consensus disorder prediction	382	396	-	-
	Seca4g11148	663	Gene3D	Transferase(Phosphotransferase) domain 1	161	276	-	-
	Seca4g11148	663	Gene3D	Transferase(Phosphotransferase) domain 1	489	639	-	-
	Seca4g11148	663	MobiDBLite	consensus disorder prediction	374	410	-	-
	Seca4g11148	663	SMART	serkin_6	82	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11148	663	ProSiteProfiles	Protein kinase domain profile.	82	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11148	663	MobiDBLite	consensus disorder prediction	1	22	-	-
	Seca4g11148	663	SUPERFAMILY	Protein kinase-like (PK-like)	57	651	IPR011009	-
	Seca4g11148	663	PANTHER	OS07G0586332 PROTEIN	1	663	IPR044576	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11148	Seca-Chr4	249930397	249932388	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11148	511	633	Receptor kinase-like Gene Family	AT3G58690	37.209	4.90e-14	72.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Seca4g11148		Pkinase	4.9e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g11148	-		-	aip:107626015	919.072