Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11124 ATGGAAGCTAAGCCTCTTCGAATTGTTCCCTCTTCACACAACACCTCTGAGGGGTTAGGAGGTGGACCCCAGAAGAAGATTGACATGGGACACATGATGGAGGGTGGTGTTAGTGTAGTAGTTGATGAAGGGAAGAGGGTTGTTCTGGTGAAGGAAGAGAACTCTTCTTCTTCCTCCTCCACTGTTGAACTTGATCTCGGGGTTGCTGCACCACACCCTGTGATCACAGCACGCCACCAAAAGTGCTGTCTGTTTACAGAGCCTCAGAGGCGTGAGCTTGACCATCAAGTTTTCATCTTCAACCACTTTGCTTATAACCTTCCTCTTCCTCCCCACCTTGCGCAATTTCCAAGCAATATGTCAGAATACAGTCACCTGGGTTTTGATTATGGGAGTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCAGTAAGAAGGTAGTGCCTAATCAGAAGTACTGTGAAAGACACATGCATAGAGGTCGTAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGACAACAAAGCCTTGTGGCAACTTACATACCAAACTAGCCCCAAATACAGAATCTGCAGTTTCAAATTCAAACCTTTTGGCCATTCAACCCAGTCACAGATCTTCATGCACCCCATCAAGGAGCCTTTGTGTTGTCAATTCCCCTTCAGCTAATAATAGGTCAAGAAATATCATAGGTTCTGCTGATTACCACACCTCCTTTTCTTCTGCCACTGTGGTGACACATGCCTACACTCTTGCCACTGCAGTTGCACCTAAGGTGACTTTCAGCAGCATGGAATCTGTTACTTCTGATAACAGGAGTCACCTAAATGTGTGCAAGAAAGATGACCAGATCAAGAGCTGTATCAGCAGCAAGTTCAGTATTAAAGATGGTGGAAAAGGAAGAGTTGTCTGTGATAGTAATGGTATCTCTGCTGGAATAGGCTTCTCTCCAAGGAGTGTTCTTCAAGTTTCTGGTAGCAATCATTCATACCTCAATGACAGAAACAATATAGAACTTGAACCTGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCGGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTATTGTGCCACACATATGCACAGGGGTGCTAAAAAGCGTTTTACAAACCATGAACCAGCTACTGCTGCCACTACTACTACTCCTAGTTCTGCTGTTACCATTGCTAGGTTGTCTTACCCTTCAGCCACAACAACCAACATTCAGAAAGCGTATTGTACAATTCCAAATACAAATCTTTCCATGTCAGTCCCAGCAAGTGAACCCTTCATACAATGTTGTGACAAAAGTCCTAGCAGCAGTGACACTGATACCACCATCAGTGACACCATCAATGAGTGTAGCTATGTTTCTTTCTAA 1428 0.4454 MEAKPLRIVPSSHNTSEGLGGGPQKKIDMGHMMEGGVSVVVDEGKRVVLVKEENSSSSSSTVELDLGVAAPHPVITARHQKCCLFTEPQRRELDHQVFIFNHFAYNLPLPPHLAQFPSNMSEYSHLGFDYGSMVDPEPHRCRRTDGKKWRCSKKVVPNQKYCERHMHRGRNRSRKPVETSQVNSPLTTKPCGNLHTKLAPNTESAVSNSNLLAIQPSHRSSCTPSRSLCVVNSPSANNRSRNIIGSADYHTSFSSATVVTHAYTLATAVAPKVTFSSMESVTSDNRSHLNVCKKDDQIKSCISSKFSIKDGGKGRVVCDSNGISAGIGFSPRSVLQVSGSNHSYLNDRNNIELEPGRCRRTDGKKWRCKSAVLPGQKYCATHMHRGAKKRFTNHEPATAATTTTPSSAVTIARLSYPSATTTNIQKAYCTIPNTNLSMSVPASEPFIQCCDKSPSSSDTDTTISDTINECSYVSF. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11124 475 ProSiteProfiles WRC domain profile. 352 396 IPR014977 -
Seca4g11124 475 MobiDBLite consensus disorder prediction 169 193 - -
Seca4g11124 475 ProSiteProfiles WRC domain profile. 135 179 IPR014977 -
Seca4g11124 475 MobiDBLite consensus disorder prediction 176 193 - -
Seca4g11124 475 ProSiteProfiles QLQ domain profile. 84 119 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11124 475 PANTHER GROWTH-REGULATING FACTOR 5 338 438 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca4g11124 475 Pfam WRC 136 178 IPR014977 -
Seca4g11124 475 Pfam WRC 354 392 IPR014977 -
Seca4g11124 475 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11124 Seca-Chr4 249587578 249591534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11124 89 412 GRF Transcription Factor Family AT2G45480 32.692 8.65e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11124 - - gmx:100795050 615.535