Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11119 ATGTCGGTGACTCTGCATACAAACCTAGGCGACATCAAGTGCGAAATCTTCTGCGACGAGGTTCCCAAAACCTCTGAGAACTTTTTAGCGCTGTGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAAGGTTTTATGATTCAAGGTGGAGACCCAACTGGTACTGGCAAAGGGGGGACTAGTATATGGGGCAAAAAATTCAATGATGAGATAAGAGAATCTTTGAAGGTGAGTTCATCAACCATGCTAATTACTATGAAGCTGTGTCTGTTCCAGCACAATGCAAGGGGAATATTGTCAATGGCTAATAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATATCTTATGCAAAGCAGCCTCATTTGAATGGGCTATATACTGTGTTTGGCAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCAAACAGGGGCAGGGGATCGACCACTTGCTGAGATAAGGCTTAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG 531 0.42 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKVSSSTMLITMKLCLFQHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11119 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 144 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 116 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 128 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 Gene3D - 1 176 IPR029000 -
Seca4g11119 176 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 169 IPR044666 -
Seca4g11119 176 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 169 IPR002130 GO:0000413|GO:0003755
Seca4g11119 176 PIRSF Peptidylpro_ismrse 1 92 IPR024936 GO:0003755
Seca4g11119 176 PIRSF Peptidylpro_ismrse 91 173 IPR024936 GO:0003755
Seca4g11119 176 CDD Cyclophilin_PPIL3_like 1 169 - -
Seca4g11119 176 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Seca4g11119 176 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Seca4g11119 176 FunFam Peptidyl-prolyl cis-trans isomerase 1 176 - -
Seca4g11119 176 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 168 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11119 Seca-Chr4 249567195 249570770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11119 3 173 U-box Gene Family AT5G67530 48.538 1.44e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11119 K12734 - fve:101314022 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11119 4 249567195 249570770 Seca4g11119 4 249567195 249570770 ECH