LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11112	ATGGCTTCGACCGTTCACCGACATCAGAGGGGAACCGTCAAGTTGGATCGCCCCAACCACCTCAGAACGGCGTCGCTCAAGCCCCGCCTCCCTCCCTCGCCGGGATCCGCCCTCCGCCGAAGTAGCCCCGCCTCTCTCGCCGCCAGAAACGGAGACGGAGTGCCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCACGAAATAATGAAGAAATGATGGCAGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGGAGAAACAATTGGGATTCAGACACTTATGAGTTTGATGAAGTGCTTACTGAATTTGCCTCACAGAAGCGTGTTTATGAAGTTGTAGCTAAGCCAGTTGTTGAGAGTGTTCTTGATGGTTATAATGGAACTGTGATGGCTTATGGTCAAACTGGAACGGGGAAAACATTTACTCTTGGACGATTGGCGGAAGAAGACACCTCTGATCGCGGAATCATGGTCCGTTCCATGGAGGATATTTTAGCTGACTTATGTCCAGAAACTGATTCTGTCACTGTCTCATATCTGCAGCTTTACATGGAGACTCTCCATGACTTGCTTAATCCAGCAAATGATAATATTCCCATAGTGGAGGATCCCAGAACTGGTGATGTGTCTTTGCCTGGGGCAACTCTTGTCGAAATCAGGAATCAGCAAAGTTTCTTGGAATTGCTAAAAGTAGGAGAAGCTAATCGAGTTGCTGCTAACACGAAGTTGAACACTGAATCTTCTCGTAGTCATGCTATACTGACGGTAAATGTTAAGAGGTCTGTCATGGAAAATGAAGATACTGTTTCTACTGAAAATGATGATGCCTCTCACTTGACTAGACCTTCAAAACCACTTATTCGAAAGAGCAAGCTGGTTGTCGTAGATTTGGCAGGATCAGAGCGTATCCATAAGTCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATATATCAATCTTTCTCTTAGTGCACTTGGAAAATGTATTAATGCTCTAGCTGAGAGCAATGCTCATGTTCCATTTCGTGATTCAAAGCTCACTAGGTTGCTCAGAGATTCCTTTGGAGGAACAGCACGGACATCATTGATTGTGACTATTGGCCCATCTCCACGTCATCGAGGAGAAACTTCTAGTACCATATTGTTTGGTCAAAGGGCTATGAAAGTTGAAAATATGCTGAAAATAAAAGAGGAGTTTGATTATAAAAGTTTGTCTCGGAGGCTTGAGGTGCAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAGGCTTTTGAGGATGAAGCTGAAAGAATAAATTTGGAGGCGCAATATCGTATTGCTGAGGTTGAGAGGAAATTTGCAGATGCACTAGAGAAAGAGAGATTGAAATGCCAGATGGAGTACATGGAATCAGTTAAGCAGCTGGAGCAAAAGTTGGTGTCAAGTCAAGAAAAACATGCTTGCAATTGTTTTGTGGATGGTTGTGGAGAGTGTTGCCCACACCAAATTTTTTGCAATTTGGCTCTTTGGCGAATTTGCAATTCCTCCTGCCTTCATTCTGGTGACACTTCGCATGGGCTTACACCATCTCCTGCCAATGAAGTTGCTGAGGTGAAAAAGCAGTTTGAAAATGAAAGCAATAGGAGAAGGGCAGCTGAAGCAGAGGTAGAACATCTGAAATGTCAGTTGGAGAAATATACAAAAGCAGAGGCAGGAGGGGATGCAGGGATCGTGAAGCTTCACAGTATCCTGGAGGATGAGGCTAACCAGAAAAAGAAACTTGAAGAAGAAATAATAATATTAAGAAGCCAATTACTGCAATTAAACTTTGAAGCTGACCAGATGAGAAGGTGTTTAGAAAGTGAAAGCTCTGTCAGTGCATTTCCTGGCATGGATTCTTCCATGTCTCAAGTTAGACATTCCCAACTAAAAGACACTAGGAATGGTCAGAAAGCATCTGTTGCTGCACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCGTTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTAAAAGTGGTGGCCAACCTAGCAGCTGAAGAGGCAAATCAAAAAAGTATTGTTGAAGCTGGTGGCCTCACTTCCTTGCTGATGCTTCTTAGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCAGCAGGGGCAATTGCCAATCTTGCCATGAATGAAGCCAATCAAGAACTTATAATGGCTGAAGGAGGAATTACTCTGTTATCAATGACTGCATCTGATGCTGAAGATGCACAAACTCTTCGAATGGTTGCTGGGGCCATTGCTAACCTGTGTGGAAATGATAAAATAATGATGAAGCTGAGATCCCAGGGAGGCATCAAGGCTTTACTGGGAATTGTAAAATGTGGACATCCTGATGTTCTTTCACAAGTTGCTCGAGGAATTGCCAACTTCGCTAAATGCGAGTCTAGAGCTTCTAATCAAGGGATAAAAAGTGGAAGATCTTTTTTGATAGAAGATGGCGCACTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCAATCAGGCGTCACATTGAACTTGCACTCTGCCACTTGGCACAGCATGAAGTGAATGCAAAGGACATGATCAGTGGAGGTGCCCTTTGGGAGCTTGTCCGGATTTCACGGGATTGTACACGAGAGGACATAAGGAATCTTGCTCGTCAGACTCTCAGTTGCATCACACCATTCAAATCTGAATTGCGACGATTACGTATAGAGTATTGA	2775	0.4364	MASTVHRHQRGTVKLDRPNHLRTASLKPRLPPSPGSALRRSSPASLAARNGDGVPGRVRVAVRLRPRNNEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLAEEDTSDRGIMVRSMEDILADLCPETDSVTVSYLQLYMETLHDLLNPANDNIPIVEDPRTGDVSLPGATLVEIRNQQSFLELLKVGEANRVAANTKLNTESSRSHAILTVNVKRSVMENEDTVSTENDDASHLTRPSKPLIRKSKLVVVDLAGSERIHKSGSEGHMLEEAKYINLSLSALGKCINALAESNAHVPFRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRRLEVQLDKLIAENERQQKAFEDEAERINLEAQYRIAEVERKFADALEKERLKCQMEYMESVKQLEQKLVSSQEKHACNCFVDGCGECCPHQIFCNLALWRICNSSCLHSGDTSHGLTPSPANEVAEVKKQFENESNRRRAAEAEVEHLKCQLEKYTKAEAGGDAGIVKLHSILEDEANQKKKLEEEIIILRSQLLQLNFEADQMRRCLESESSVSAFPGMDSSMSQVRHSQLKDTRNGQKASVAALFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKSIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDAQTLRMVAGAIANLCGNDKIMMKLRSQGGIKALLGIVKCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCTREDIRNLARQTLSCITPFKSELRRLRIEY.	925

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca4g11112	924	Pfam	Kinesin motor domain	63	399	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	MobiDBLite	consensus disorder prediction	9	23	-	-
Seca4g11112	924	MobiDBLite	consensus disorder prediction	1	52	-	-
Seca4g11112	924	ProSitePatterns	Kinesin motor domain signature.	299	310	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Seca4g11112	924	SMART	arm_5	696	737	IPR000225	GO:0005515
Seca4g11112	924	SMART	arm_5	780	820	IPR000225	GO:0005515
Seca4g11112	924	SMART	arm_5	655	695	IPR000225	GO:0005515
Seca4g11112	924	SMART	arm_5	738	779	IPR000225	GO:0005515
Seca4g11112	924	Coils	Coil	470	490	-	-
Seca4g11112	924	CDD	KISc	57	397	-	-
Seca4g11112	924	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	666	708	IPR000225	GO:0005515
Seca4g11112	924	FunFam	Kinesin-like protein	636	911	-	-
Seca4g11112	924	Pfam	Armadillo/beta-catenin-like repeat	699	736	IPR000225	GO:0005515
Seca4g11112	924	Coils	Coil	540	574	-	-
Seca4g11112	924	Gene3D	Kinesin motor domain	52	429	IPR036961	-
Seca4g11112	924	Gene3D	-	643	921	IPR011989	-
Seca4g11112	924	SUPERFAMILY	ARM repeat	658	918	IPR016024	-
Seca4g11112	924	ProSiteProfiles	Kinesin motor domain profile.	57	399	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	Coils	Coil	415	446	-	-
Seca4g11112	924	SMART	kinesin_4	55	407	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	PRINTS	Kinesin heavy chain signature	349	370	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	PRINTS	Kinesin heavy chain signature	300	318	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	PRINTS	Kinesin heavy chain signature	133	154	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Seca4g11112	924	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	707	750	IPR000225	GO:0005515
Seca4g11112	924	Coils	Coil	582	616	-	-
Seca4g11112	924	PANTHER	KINESIN-LIKE PROTEIN KIF11	57	614	IPR047149	-
Seca4g11112	924	FunFam	Kinesin-like protein	49	429	-	-
Seca4g11112	924	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	57	434	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11112	Seca-Chr4	249494276	249504960	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11112	52	446	Calmodulin-binding Proteins	AT5G65930	32.282	1.05e-44	173