Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11111 ATGGATCCTGTAGCAGCACAAGGGCGTCCTCTCCCTCCTCCTTTCCTCACTAGAGACCTTCACCTACATCCTCACCACCAATTCCAACCCCACCACAACAACCACAATGAAGATGACAATGGCACTTTGAACCGTGGCCAAAAGCGAGATCGTGACAACGACAACAACAACGGTTCCACCACTCCCACCGCTGAAGGAAAAGAAACTTCGTTTGAGGGTGGAAGTGGTGGTGGTAGTGGTGAGATGGGGAGAAGACCCAGAGGAAGACCAGCTGGTTCAAAGAACAAACCAAAACCACCCATCATCATCACAAGAGATAGCGCCAACGCTCTCCGATCTCATGTCATGGAAGTCGCCAACGGTTGCGACATCATGGAGAGCGTAACTGTCTTTGCACGGCGGCAACAACGCGGGGTTTGTATCCTTAGCGGCAACGGCACCGTCACTAATGTCACTCTCCGACAACCGGCTTCTCCGGGTGCAGTCGTCACCCTCCATGGAAGGTTCGAGATTCTTTCTCTTTCTGGGTCTTTCCTGCCTCCGCCGGCTCCACCTGCTGCCTCTGGCCTGGCTATTTACCTGGCTGGAGGACAAGGTCAAGTCGTCGGCGGAAGCGTGGTAGGACCCTTACTGGCCTCAGGGCCGGTCGTTATCATGGCAGCTTCCTTCGGGAATGCTGCCTATGAAAGACTACCCTTGGAGGATGAGGAAACCCCTGTGACCGTTCCAGGGAGTGGAGGGTTAGGGTCACAAGGGATCGTGGGAACGCAACCGCAATCGCAACCGCAACAACAACAGCAACAACAACTTGTGCCAGATCCTAACAGCTCACTTTTCCATGGAGTGTCTCAAAATCTTCTCAATCCATGCCAATTACCAGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCTTTTTAA 921 0.5375 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNNHNEDDNGTLNRGQKRDRDNDNNNGSTTPTAEGKETSFEGGSGGGSGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRQQRGVCILSGNGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVTVPGSGGLGSQGIVGTQPQSQPQQQQQQQLVPDPNSSLFHGVSQNLLNPCQLPAEGYWGGSARPPF. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11111 306 MobiDBLite consensus disorder prediction 19 55 - -
Seca4g11111 306 MobiDBLite consensus disorder prediction 1 101 - -
Seca4g11111 306 PIRSF ESCAROLA 16 306 IPR014476 GO:0003680
Seca4g11111 306 MobiDBLite consensus disorder prediction 250 282 - -
Seca4g11111 306 MobiDBLite consensus disorder prediction 236 282 - -
Seca4g11111 306 Gene3D - 111 241 - -
Seca4g11111 306 FunFam AT-hook motif nuclear-localized protein 111 238 - -
Seca4g11111 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Seca4g11111 306 CDD DUF296 112 179 IPR005175 -
Seca4g11111 306 ProSiteProfiles PPC domain profile profile. 108 246 IPR005175 -
Seca4g11111 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 243 - -
Seca4g11111 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 273 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11111 Seca-Chr4 249487093 249488013 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11111 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.596 1.22e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11111 - - gmx:100816243 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11111 4 249487093 249488013 Seca4g11111 4 249487093 249488013 ECH