Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11109 ATGAGTGCAAACTCTAGTTGTAGTGGAAGTGGTGGTGGTGGTGGAAGTAATAGTGGTCCTTGTGGCGCGTGCAAGTTCTTGAGGAGAAAGTGCGTGGCGGGTTGTATCTTTGCGCCATACTTTGATTCAGAGCAAGGTGCTTCACACTTTGCCGCAGTGCACAAGGTTTTTGGTGCCAGTAACGTTTCGAAGATGTTACTCAACATTCCGGTGCATAAGCGTCTCGATGCGGTTATCACAATTTGTTACGAAGCACAGGCACGGTTGAAAGACCCTGTCTATGGTTGCGTTGCTCATATCTTCGCTCTTCAGCAACAGGTGGTGAGTTTACAAGCAGAACTCTCCTATTTACAAGGCCACTTAGCCACATTAGAGTTACCCCAACCACCATCACCTTCTCCGCCGCAAGCAACCTTAGCTCCGCCGGTGGTTTCTTCAATAGCCAACCTTCCACCAGTCTCTTCCTTTGCCGTGCCAGCAACATATGACTTATCTTCACTCTTTGATCCCATGGCCCAAACTTCTTCATGGGCCATGCATCAGAGGCCCATAGACCCACGTCAATATTTGGGTAGTAGTGCCACATCAGTCACTAGTAGTGGTGGTGATCTTCAAGCATTGGCTCGGGAGCTTATGCAAAGACATGGATCTGCTCCTCCTGTGGCATGCTCAAATGCATCCTCATCTCACTCGCTTTCCAAATGA 705 0.4894 MSANSSCSGSGGGGGSNSGPCGACKFLRRKCVAGCIFAPYFDSEQGASHFAAVHKVFGASNVSKMLLNIPVHKRLDAVITICYEAQARLKDPVYGCVAHIFALQQQVVSLQAELSYLQGHLATLELPQPPSPSPPQATLAPPVVSSIANLPPVSSFAVPATYDLSSLFDPMAQTSSWAMHQRPIDPRQYLGSSATSVTSSGGDLQALARELMQRHGSAPPVACSNASSSHSLSK. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11109 234 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
Seca4g11109 234 MobiDBLite consensus disorder prediction 220 234 - -
Seca4g11109 234 MobiDBLite consensus disorder prediction 212 234 - -
Seca4g11109 234 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Seca4g11109 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11109 Seca-Chr4 249412888 249415895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11109 23 234 AS2 family AT2G45420 60.000 3.39e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g11109 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11109 K21994 - gmx:100798425 308.531