Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11108 ATGGATTGTGGAGGAAAGATTGGTGGCAGTAGTGAAAGAGGTGGGCCTTGTGGTGCTTGCAAGTTTTTGAGGAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATACTTTGACTCAGACCAAGGAACCCTTCATTTTGCTGCTGTGCATAAGGTGTTTGGTGCTAGTAATGCCTCTAAGCTACTCATGCGCATCCCAGCACATAAGCGTGTTGATGCTGTTGTTACTCTCTGCTATGAAGCTCTGGCTAGAACTAGAGACCCTGTTTATGGCTGTGTTGCTCACATCTTTGCCCTTCAACAACAGGTAGTAATGAACTTGCAGGCAGAGTTAACCTATGTTCAGGCCCGTCTTGCCACAATGCAGCGTCTTCCACTCCCAGTAGCACCTCCTCTTCCACATCCCCAAACCTCTTCATCAACTAGTCTTCATTCCTCCTCAGATCACTTGACATTAAATGCTGACTTGCAAAGTGCTACTGACCTATCTATGCAATTTGATCCTCTTCAATCACATTCAACATCATTACAATTAAGCACCTTTTTTGATCCATCAGATCAACAACTCGAGGATGGGGAACTCCACGCTTTGGCTCGAGAATTTGTGACTAGGTACTTGCCTGGAGTAAGATTCCAGCCACCAAATTCTAACTAA 654 0.4511 MDCGGKIGGSSERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTLHFAAVHKVFGASNASKLLMRIPAHKRVDAVVTLCYEALARTRDPVYGCVAHIFALQQQVVMNLQAELTYVQARLATMQRLPLPVAPPLPHPQTSSSTSLHSSSDHLTLNADLQSATDLSMQFDPLQSHSTSLQLSTFFDPSDQQLEDGELHALAREFVTRYLPGVRFQPPNSN. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11108 217 ProSiteProfiles LOB domain profile. 15 118 IPR004883 -
Seca4g11108 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 166 - -
Seca4g11108 217 Pfam Lateral organ boundaries (LOB) domain 16 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11108 Seca-Chr4 249357179 249362090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11108 8 213 AS2 family AT4G00210 54.955 2.97e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g11108 LOB 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11108 - - tpra:123898243 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11108 4 249357179 249362090 Seca4g11108 4 249357179 249362090 ECH