Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11106 ATGGAAGGTAGAGAAGGTATTAGTTCTGGGGTTACAGTTATAGGGGCAGAAGCTCCTTCATCTTATCATGTGGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCTCTGATGCAGCAGCAGCTGCTGCTGGAGCTATTGGTGTCTCCCCAGTGAGTGTGGGGTTGGATGGATCAGCAGTTAAGAAGAAACGGGGTAGACCAAGGAAGTATGGACCAGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCATCTTCAGCTCCACCCTCTAATGACTTTTCATCTGGGAAACGCGGGAAACCGCGTGCGATGGAATACAAGCCGTCAAAAAAAGTTGGATTGGATCATTTTGGTAATTGGTTTCAATTTAGTTCACTAATATCTATTGTTGGTACTTTTGTAGGTGACATGAATGCATGCTCAGATGGTACCAACTTTATGCCGCACATAATTACTGTGAACGCTGGCGAGGACATTACAATGAAGGTGATATCCTTTTCTCAACAAGGACCCCGAGCTATATGCATCTTATCTGCTACTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGCCGTTTTGATATACTTTCCTTGTCGGGATCCTTCATGCCTACTGACAGTCAAGGAACACGAAGTAGATCTGGTGGGATGAGTGTCTCGTTGGCCAGTCCGGATGGTCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTCATAGCTGCCGGTCCTGTTCAGGTGGTAGTGGGAAGTTTCCTACCAAGCAGCCAGCAAGATCAGAAACCAAAGAAGGCCAAGTCTGATTATGCAGCAGCCACTGTTACTCAAGCCAATGCAGTATCTTCTGCTCCACCACCCCCAACTAATGCTGAAAAAGAGGATGTCATGGGTGGACATGTACTCCAAAATTCTGGAACCCTTAACTCAAACCTTACTTCTCCTCCAAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGGAAGTCAGCTACTGATATTAACATATCTCTTCCTGATAGTTAA 1077 0.4615 MEGREGISSGVTVIGAEAPSSYHVAPRSEAPNQVHVSDAAAAAAGAIGVSPVSVGLDGSAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKPRAMEYKPSKKVGLDHFGNWFQFSSLISIVGTFVGDMNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFDILSLSGSFMPTDSQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPSSQQDQKPKKAKSDYAAATVTQANAVSSAPPPPTNAEKEDVMGGHVLQNSGTLNSNLTSPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11106 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 332 IPR039605 GO:0003680
Seca4g11106 358 MobiDBLite consensus disorder prediction 59 106 - -
Seca4g11106 358 MobiDBLite consensus disorder prediction 81 96 - -
Seca4g11106 358 FunFam AT-hook motif nuclear-localized protein 1-like 151 282 - -
Seca4g11106 358 ProSiteProfiles PPC domain profile profile. 146 287 IPR005175 -
Seca4g11106 358 Gene3D - 151 285 - -
Seca4g11106 358 CDD DUF296 151 264 IPR005175 -
Seca4g11106 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 268 - -
Seca4g11106 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11106 Seca-Chr4 249320357 249325402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11106 10 295 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.272 4.28e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11106 - - gmx:100796830 539.265